(Q33384130)

English

GC content increased at CpG flanking positions of fish genes compared with sea squirt orthologs as a mechanism for reducing impact of DNA methylation

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

GC content increased at CpG flanking positions of fish genes compared with sea squirt orthologs as a mechanism for reducing impact of DNA methylation (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

DNA methylation

0 references

author name string

Yong Wang

1

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Frederick C C Leung

2

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

language of work or name

0 references

publication date

13 November 2008

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

3

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

11

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

e3612

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

copyright license

Creative Commons Attribution 4.0 International

13 November 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Comparative genomic study reveals a transition from TA richness in invertebrates to GC richness in vertebrates at CpG flanking sites: an indication for context-dependent mutagenicity of methylated CpG sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

Comparative analysis of CpG islands in four fish genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

CpG methylation is targeted to transcription units in an invertebrate genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

Structural organization of the sea urchin DNA (cytosine-5)-methyltransferase gene and characterization of five alternative spliced transcripts.

1 reference

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Mismatch Repair in Methylated DNA: STRUCTURE AND ACTIVITY OF THE MISMATCH-SPECIFIC THYMINE GLYCOSYLASE DOMAIN OF METHYL-CpG-BINDING PROTEIN MBD4

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

Enhanced CpG mutability and tumorigenesis in MBD4-deficient mice.

1 reference

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The evolution of isochores

1 reference

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The compositional evolution of vertebrate genomes

1 reference

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28 July 2018

Isochores and the evolutionary genomics of vertebrates

1 reference

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28 July 2018

The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites

1 reference

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28 July 2018

Global dinucleotide signatures and analysis of genomic heterogeneity

1 reference

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28 July 2018

Methylation of genomes and genes at the invertebrate-vertebrate boundary

1 reference

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28 July 2018

Isolation of cDNA clones encoding DNA methyltransferase of sea urchin P. lividus: expression during embryonic development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

Sequence specificity in CpG mutation hotspots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

Approaches to characterize protein-DNA interactions in vivo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

Pervasive CpG suppression in animal mitochondrial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

Why is CpG suppressed in the genomes of virtually all small eukaryotic viruses but not in those of large eukaryotic viruses?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

Dinucleotide relative abundance extremes: a genomic signature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

DNA methylation and the frequency of CpG in animal DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

The mosaic genome of warm-blooded vertebrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

CpG islands in vertebrate genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

Molecular basis of base substitution hotspots in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2580031

28 July 2018

DNA methylation in Drosophila melanogaster.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003612

21 January 2018

CpG mutation rates in the human genome are highly dependent on local GC content

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003612

21 January 2018

Nonmethylated transposable elements and methylated genes in a chordate genome

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003612

21 January 2018

Genome-scale relationships between cytosine methylation and dinucleotide abundances in animals

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003612

21 January 2018

Base compositions of genes encoding alpha-actin and lactate dehydrogenase-A from differently adapted vertebrates show no temperature-adaptive variation in G + C content

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003612

21 January 2018

A relationship between GC content and coding-sequence length.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003612

21 January 2018

Effects of GC content and mutational pressure on the lengths of exons and coding sequences

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003612

21 January 2018

Mbd4 inactivation increases Cright-arrowT transition mutations and promotes gastrointestinal tumor formation

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003612

21 January 2018

Dipeptide frequencies in proteins and the CpG deficiency in vertebrate DNA.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003612

21 January 2018

DNA structure constraint is probably a fundamental factor inducing CpG deficiency in bacteria.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003612

21 January 2018

Cytosine methylation is not the major factor inducing CpG dinucleotide deficiency in bacterial genomes

1 reference

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21 January 2018

DNA methylation and cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/19005573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural deviations at CpG provide a plausible explanation for the high frequency of mutation at this site. Phosphorus nuclear magnetic resonance and circular dichroism studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/19005573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA (cytosine-5) methyltransferase turnover and cellular localization in developing Paracentrotus lividus sea urchin embryo

1 reference

https://pubmed.ncbi.nlm.nih.gov/19005573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA methylation and structural and functional bimodality of vertebrate promoters

1 reference

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inferred from PubMed ID database lookup

Evolutionary changes in CpG and methylation levels in the genome of vertebrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/19005573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0003612

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

2008PLoSO...3.3612W

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

ResearchGate publication ID

0 references

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