(Q33422847)

26 July 2017

A general pipeline for quality and statistical assessment of protein interaction data using R and Bioconductor (English)

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26 July 2017

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Tony Chiang

1

1 reference

PubMed ID

19325550

26 July 2017

Denise Scholtens

series ordinal

2

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26 July 2017

26 March 2009

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26 July 2017

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26 July 2017

4

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26 July 2017

535-546

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26 July 2017

4

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https://scigraph.springernature.com/pub.10.1038/nprot.2009.26

26 July 2017

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cites work

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A computationally directed screen identifying interacting coiled coils from Saccharomyces cerevisiae

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A comprehensive two-hybrid analysis to explore the yeast protein interactome

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A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules

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Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis

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Assigning function to yeast proteins by integration of technologies.

21 January 2018

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A two-hybrid screen of the yeast proteome for Hsp90 interactors uncovers a novel Hsp90 chaperone requirement in the activity of a stress-activated mitogen-activated protein kinase, Slt2p (Mpk1p).

21 January 2018

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Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

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Functional organization of the yeast proteome by systematic analysis of protein complexes

21 January 2018

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Proteome survey reveals modularity of the yeast cell machinery

21 January 2018

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 January 2018

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Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.

21 January 2018

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90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors

21 January 2018

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Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the hsp90 chaperone

21 January 2018

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Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast

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Coverage and error models of protein-protein interaction data by directed graph analysis

21 January 2018

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Estimating node degree in bait-prey graphs

21 January 2018

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From pull-down data to protein interaction networks and complexes with biological relevance

21 January 2018

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Local modeling of global interactome networks.

21 January 2018

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Bioconductor: open software development for computational biology and bioinformatics

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

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Integration of biological networks and gene expression data using Cytoscape

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GraphCrunch: a tool for large network analyses

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Unraveling protein networks with power graph analysis

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Network structures and algorithms in Bioconductor

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Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions

21 January 2018

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BioGRID: a general repository for interaction datasets

21 January 2018

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The Database of Interacting Proteins: 2004 update

21 January 2018

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Human protein reference database--2006 update

21 January 2018

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IntAct--open source resource for molecular interaction data

21 January 2018

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MINT: the Molecular INTeraction database

21 January 2018

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The minimum information required for reporting a molecular interaction experiment (MIMIx).

21 January 2018

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Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

21 January 2018

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The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.26

Using GOstats to test gene lists for GO term association

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19325550

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NPROT.2009.26

1 reference

PubMed ID

19325550

Dimensions Publication ID

26 July 2017

0 references

1 reference

PubMed ID

19325550