(Q33433263)

8 July 2018

review article

1 reference

title

ESTPiper--a web-based analysis pipeline for expressed sequence tags (English)

1 reference

8 July 2018

author

John K. Colbourne

5

1 reference

26 July 2017

Zuojian Tang

1

1 reference

8 July 2018

Jeong-Hyeon Choi

2

1 reference

8 July 2018

Chris Hemmerich

3

1 reference

8 July 2018

Ankita Sarangi

4

1 reference

8 July 2018

Qunfeng Dong

6

1 reference

8 July 2018

language of work or name

English

0 references

publication date

21 April 2009

1 reference

8 July 2018

published in

BMC Genomics

1 reference

8 July 2018

volume

10

1 reference

8 July 2018

page(s)

174

1 reference

8 July 2018

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-188

exact match

0 references

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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Codon usage and tRNA content in unicellular and multicellular organisms

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

A hitchhiker's guide to expressed sequence tag (EST) analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

preAssemble: a tool for automatic sequencer trace data processing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

ParPEST: a pipeline for EST data analysis based on parallel computing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

Construction and characterization of a rock-cluster-based EST analysis pipeline

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

Comparative plant genomics resources at PlantGDB.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

Comparative EST analyses in plant systems

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

OrfPredictor: predicting protein-coding regions in EST-derived sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

ECgene: genome-based EST clustering and gene modeling for alternative splicing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

EST pipeline system: detailed and automated EST data processing and mining

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

ESTAP--an automated system for the analysis of EST data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

EST-PAGE--managing and analyzing EST data.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

Expressed sequence tags: alternative or complement to whole genome sequences?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

PROBEmer: A web-based software tool for selecting optimal DNA oligos

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

ESTAnnotator: A tool for high throughput EST annotation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

PipeOnline 2.0: automated EST processing and functional data sorting

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

BLAT—The BLAST-Like Alignment Tool

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

CAP3: A DNA sequence assembly program

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

Complementary DNA sequencing: expressed sequence tags and human genome project

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

PartiGene--constructing partial genomes.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

ESTWeb: bioinformatics services for EST sequencing projects.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

Refined annotation of the Arabidopsis genome by complete expressed sequence tag mapping.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

Selection of oligonucleotide probes for protein coding sequences

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

DNA sequence quality trimming and vector removal.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2676306

ESTprep: preprocessing cDNA sequence reads

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19383159

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-10-188

1 reference

8 July 2018

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-188

9 September 2019

1 reference

8 July 2018

PubMed ID

19383159

1 reference

8 July 2018