(Q33504494)

27 July 2017

title

MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes (English)

1 reference

27 July 2017

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Mina Rho

1

1 reference

27 July 2017

Haixu Tang

series ordinal

2

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27 July 2017

language of work or name

English

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publication date

1 November 2009

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27 July 2017

published in

Nucleic Acids Research

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27 July 2017

volume

37

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27 July 2017

issue

21

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27 July 2017

page(s)

e143

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Non-LTR retrotransposons in fungi

27 July 2017

cites work

1 reference

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21 June 2018

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21 June 2018

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De novo identification of LTR retrotransposons in eukaryotic genomes

21 June 2018

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The genome of the sea urchin Strongylocentrotus purpuratus

21 June 2018

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21 June 2018

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21 June 2018

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Automated characterization of potentially active retroid agents in the human genome

21 June 2018

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Recognition of transmembrane helices by the endoplasmic reticulum translocon.

21 June 2018

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Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae

21 June 2018

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The non-LTR retrotransposons in Ciona intestinalis: new insights into the evolution of chordate genomes

21 June 2018

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R5 retrotransposons insert into a family of infrequently transcribed 28S rRNA genes of planaria

21 June 2018

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The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective

21 June 2018

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The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

21 June 2018

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Automated de novo identification of repeat sequence families in sequenced genomes

21 June 2018

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Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia

21 June 2018

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Initial sequencing and analysis of the human genome

21 June 2018

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A search for reverse transcriptase-coding sequences reveals new non-LTR retrotransposons in the genome of Drosophila melanogaster

21 June 2018

1 reference

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Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomes

21 June 2018

1 reference

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The genome sequence of Drosophila melanogaster

21 June 2018

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NeSL-1, an ancient lineage of site-specific non-LTR retrotransposons from Caenorhabditis elegans.

21 June 2018

1 reference

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The age and evolution of non-LTR retrotransposable elements

21 June 2018

1 reference

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The domain structure and retrotransposition mechanism of R2 elements are conserved throughout arthropods

21 June 2018

1 reference

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21 June 2018

1 reference

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Structural, genomic, and phylogenetic analysis of Lian, a novel family of non-LTR retrotransposons in the yellow fever mosquito, Aedes aegypti

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

bilbo, a non-LTR retrotransposon of Drosophila subobscura: a clue to the evolution of LINE-like elements in Drosophila

21 June 2018

1 reference

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Experimentally determined hydrophobicity scale for proteins at membrane interfaces

21 June 2018

1 reference

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Hidden Markov models in computational biology. Applications to protein modeling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

2.2 A resolution structure of the amino-terminal half of HIV-1 reverse transcriptase (fingers and palm subdomains)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

A simple method for displaying the hydropathic character of a protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

Evidence of multiple retrotransposons in two litopenaeid species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

Cross-genome screening of novel sequence-specific non-LTR retrotransposons: various multicopy RNA genes and microsatellites are selected as targets

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

Non-LTR retrotransposons in the African malaria mosquito, Anopheles gambiae: unprecedented diversity and evidence of recent activity

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

LTR_STRUC: a novel search and identification program for LTR retrotransposons

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

Evolutionary dynamics in a novel L2 clade of non-LTR retrotransposons in Deuterostomia

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

Distribution of the bilbo non-LTR retrotransposon in Drosophilidae and its evolution in the Drosophila obscura species group.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790886

31 October 2018

Identifiers

DOI

10.1093/NAR/GKP752

1 reference

27 July 2017

1 reference

27 July 2017

1 reference