(Q33515852)

27 July 2017

title

The effect of sequencing errors on metagenomic gene prediction (English)

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27 July 2017

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Katharina J Hoff

1

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27 July 2017

language of work or name

English

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publication date

12 November 2009

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27 July 2017

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27 July 2017

volume

10

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27 July 2017

page(s)

520

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UFO: a web server for ultra-fast functional profiling of whole genome protein sequences

27 July 2017

cites work

1 reference

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14 July 2018

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MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes

14 July 2018

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MetaSim: a sequencing simulator for genomics and metagenomics

14 July 2018

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Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities

14 July 2018

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Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

Gene prediction in metagenomic fragments: a large scale machine learning approach

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

Metagenomics: read length matters

14 July 2018

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Metagenomic characterization of Chesapeake Bay virioplankton

14 July 2018

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Quantitative assessment of protein function prediction from metagenomics shotgun sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

Accuracy and quality of massively parallel DNA pyrosequencing

14 July 2018

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Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

14 July 2018

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The marine viromes of four oceanic regions

14 July 2018

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14 July 2018

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Symbiosis insights through metagenomic analysis of a microbial consortium

14 July 2018

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Genome sequencing in microfabricated high-density picolitre reactors

14 July 2018

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14 July 2018

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14 July 2018

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Improved microbial gene identification with GLIMMER

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

Heuristic approach to deriving models for gene finding

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

A sequencing method based on real-time pyrophosphate

14 July 2018

1 reference

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Base-calling of automated sequencer traces using phred. I. Accuracy assessment

14 July 2018

1 reference

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GeneMark.hmm: new solutions for gene finding

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

Partial sequence analysis of 130 randomly selected maize cDNA clones

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

Basic local alignment search tool

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

DNA sequencing with chain-terminating inhibitors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

Modeling sequencing errors by combining Hidden Markov models.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

Finding novel genes in bacterial communities isolated from the environment

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2781827

31 October 2018

Identifiers

DOI

10.1186/1471-2164-10-520

1 reference

Dimensions Publication ID

27 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-520

9 September 2019

1 reference

27 July 2017

1 reference