(Q33519498)

27 July 2017

title

Alu and b1 repeats have been selectively retained in the upstream and intronic regions of genes of specific functional classes (English)

1 reference

27 July 2017

1

0 references

Isidore Rigoutsos

series ordinal

2

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publication date

18 December 2009

1 reference

PLOS Computational Biology

27 July 2017

published in

1 reference

27 July 2017

volume

5

1 reference

27 July 2017

issue

12

1 reference

27 July 2017

page(s)

e1000610

1 reference

Creative Commons Attribution 4.0 International

27 July 2017

copyright license

start time

18 December 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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14 July 2018

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14 July 2018

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Human and mouse introns are linked to the same processes and functions through each genome's most frequent non-conserved motifs

14 July 2018

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14 July 2018

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p16(INK4a) translation suppressed by miR-24

14 July 2018

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Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock

14 July 2018

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Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b

14 July 2018

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The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race

14 July 2018

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MicroRNA-134 modulates the differentiation of mouse embryonic stem cells, where it causes post-transcriptional attenuation of Nanog and LRH1.

14 July 2018

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14 July 2018

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14 July 2018

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Thousands of human mobile element fragments undergo strong purifying selection near developmental genes

14 July 2018

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14 July 2018

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14 July 2018

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Alu elements as regulators of gene expression

14 July 2018

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Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes

14 July 2018

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Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes

14 July 2018

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

14 July 2018

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14 July 2018

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14 July 2018

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Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer

14 July 2018

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14 July 2018

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Duplication, coclustering, and selection of human Alu retrotransposons

14 July 2018

1 reference

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Mobile elements and mammalian genome evolution.

14 July 2018

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Statistical significance for genomewide studies

14 July 2018

1 reference

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Widespread occurrence of antisense transcription in the human genome

14 July 2018

1 reference

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Molecular archeology of L1 insertions in the human genome.

14 July 2018

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Retroelement distributions in the human genome: variations associated with age and proximity to genes

14 July 2018

1 reference

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14 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784220

Computational discovery of sense-antisense transcription in the human and mouse genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784220

Alu repeats and human genomic diversity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784220

Genomic characterization of recent human LINE-1 insertions: evidence supporting random insertion

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784220

Alu-mediated phylogenetic novelties in gene regulation and development

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784220

RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784220

Coordinated posttranscriptional control of gene expression by modular elements including Alu-like repetitive sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784220

Emergence of master sequences in families of retroposons derived from 7sl RNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784220

Human genome organization: Alu, LINES, and the molecular structure of metaphase chromosome bands

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784220

Origin of the Alu family: a family of Alu-like monomers gave birth to the left and the right arms of the Alu elements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784220

Why are young and old repetitive elements distributed differently in the human genome?

14 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000610

Alu repeat analysis in the complete human genome: trends and variations with respect to genomic composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000610

The biased distribution of Alus in human isochores might be driven by recombination.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000610

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000610

Nonrandom distribution of alu elements in genes of various functional categories: insight from analysis of human chromosomes 21 and 22.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000610

Megabase deletions of gene deserts result in viable mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000610

Transposable elements are found in a large number of human protein-coding genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000610

Alu: a parasite's parasite?

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20019790

12 December 2020

inferred from PubMed ID database lookup

So much "junk" DNA in our genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20019790

12 December 2020

inferred from PubMed ID database lookup

Conservation of RET regulatory function from human to zebrafish without sequence similarity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20019790

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000610

1 reference

journals/ploscb/TsirigosR09

27 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_55ijejwogfgtnmull7l7jwgalu

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/55ijejwogfgtnmull7l7jwgalu

24 November 2022

mapped directly with Wikidata item

PMC publication ID

2784220

1 reference

27 July 2017

1 reference