(Q33537644)

English

Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results

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scholarly article

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Europe PubMed Central

27 July 2017

1 reference

Europe PubMed Central

Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results (English)

1 reference

Europe PubMed Central

27 July 2017

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author name string

Langley DR

1

1 reference

Europe PubMed Central

27 July 2017

publication date

1 December 1998

1 reference

Europe PubMed Central

27 July 2017

Journal of Biomolecular Structure and Dynamics

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Europe PubMed Central

27 July 2017

16

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Europe PubMed Central

27 July 2017

487-509

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Europe PubMed Central

27 July 2017

3

1 reference

Europe PubMed Central

27 July 2017

Some rules for predicting the base-sequence dependence of DNA conformation

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Salt induced B----A transition of poly(dG).poly(dC) and the stabilization of A form by its methylation

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

The detection of B-form/A-form junction in a deoxyribonucleotide duplex

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Preliminary spectroscopic characterization of a synthetic DNA oligomer containing a B-Z junction at high salt

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Conformational sub-states in B-DNA.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Asymmetric lateral distribution of unshielded phosphate groups in nucleosomal DNA and its role in DNA bending

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

DNA bending by asymmetric phosphate neutralization

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

DNA bending by hexamethylene-tethered ammonium ions

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

DNA bending by a phantom protein

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

The effects of truncating long-range forces on protein dynamics.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Die Berechnung optischer und elektrostatischer Gitterpotentiale

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Calculations of nucleic acid conformations

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

A molecular level picture of the stabilization of A-DNA in mixed ethanol-water solutions

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Structure of a B-DNA dodecamer: conformation and dynamics

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Molecular dynamics simulations of the glucocorticoid receptor DNA-binding domain in complex with DNA and free in solution

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Crystal studies of B-DNA: the answers and the questions

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Solution structure of the CpG containing d(CTTCGAAG)2 oligonucleotide: NMR data and energy calculations are compatible with a BI/BII equilibrium at CpG.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Molecular structure of an anticancer drug-DNA complex: daunomycin plus d(CpGpTpApCpG).

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

The crystal structure of d(G-G-G-G-C-C-C-C). A model for poly(dG).poly(dC)

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

An A-DNA triplet code: thermodynamic rules for predicting A- and B-DNA

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Comparison of simple potential functions for simulating liquid water

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Defining the structure of irregular nucleic acids: conventions and principles

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows.

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Refinement of the structure of B-DNA and implications for the analysis of X-ray diffraction data from fibers of biopolymers

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Molecular electrostatic potential of the nucleic acids

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

The octamer motif in immunoglobulin genes: extraction of structural constraints from two-dimensional NMR studies

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Cleavage behavior of calicheamicin gamma 1 and calicheamicin T

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Molecular structure of a left-handed double helical DNA fragment at atomic resolution

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

The crystal structure of r(CCCCGGGG) in two distinct lattices

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Geometric Parameters in Nucleic Acids: Nitrogenous Bases

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Structure of the Purine–Pyrimidine Alternating RNA Double Helix, r(GUAUAUA)d(C), with a 3'-Terminal Deoxy Residue

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1998.10508265

21 January 2018

Identifiers

10.1080/07391102.1998.10508265

1 reference

Europe PubMed Central

27 July 2017

1 reference

Europe PubMed Central

27 July 2017

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