(Q33541911)

20238087

27 July 2017

title

Web-based analysis of (Epi-) genome data using EpiGRAPH and Galaxy (English)

1 reference

27 July 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6529944&resulttype=core&format=json

14 May 2020

Anton Nekrutenko

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6529944&resulttype=core&format=json

14 May 2020

James Taylor

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6529944&resulttype=core&format=json

14 May 2020

Thomas Lengauer

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6529944&resulttype=core&format=json

14 May 2020

author name string

Greg Von Kuster

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6529944&resulttype=core&format=json

14 May 2020

Konstantin Halachev

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6529944&resulttype=core&format=json

14 May 2020

language of work or name

English

0 references

publication date

1 January 2010

1 reference

20238087

27 July 2017

number of pages

22

1 reference

Methods in Molecular Biology

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6529944&resulttype=core&format=json

14 May 2020

volume

628

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6529944&resulttype=core&format=json

14 May 2020

page(s)

275-296

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6529944&resulttype=core&format=json

EMBOSS: the European Molecular Biology Open Software Suite

14 May 2020

cites work

1 reference

12 December 2020

A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q

1 reference

12 December 2020

Bioconductor: open software development for computational biology and bioinformatics

1 reference

12 December 2020

The ENCODE (ENCyclopedia Of DNA Elements) Project

1 reference

12 December 2020

HyPhy: hypothesis testing using phylogenies

1 reference

12 December 2020

Mapping of genetic and epigenetic regulatory networks using microarrays

1 reference

12 December 2020

BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.

1 reference

12 December 2020

Galaxy: a platform for interactive large-scale genome analysis

1 reference

12 December 2020

CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure

1 reference

12 December 2020

Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band.

1 reference

12 December 2020

Computational prediction of methylation status in human genomic sequences

1 reference

12 December 2020

Predicting methylation status of CpG islands in the human brain.

1 reference

12 December 2020

Model-based analysis of tiling-arrays for ChIP-chip.

1 reference

12 December 2020

DNA methylation profiling of human chromosomes 6, 20 and 22

1 reference

12 December 2020

What is a support vector machine?

1 reference

12 December 2020

The evolution of gene regulation by transcription factors and microRNAs

1 reference

12 December 2020

The mammalian epigenome

1 reference

12 December 2020

The human genomic melting map.

1 reference

12 December 2020

Phenotypic plasticity and the epigenetics of human disease

1 reference

12 December 2020

HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications

1 reference

12 December 2020

CpG island mapping by epigenome prediction

1 reference

12 December 2020

A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly

1 reference

12 December 2020

Machine learning and its applications to biology

1 reference

12 December 2020

A second generation human haplotype map of over 3.1 million SNPs

1 reference

12 December 2020

Getting started in tiling microarray analysis

1 reference

12 December 2020

1 reference

12 December 2020

Computational epigenetics

1 reference

12 December 2020

The influence of genetic variation on gene expression

1 reference

12 December 2020

The UCSC Genome Browser Database: 2008 update

1 reference

12 December 2020

Genome-wide approaches to studying chromatin modifications

1 reference

12 December 2020

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

1 reference

12 December 2020

Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping

1 reference

12 December 2020

QUMA: quantification tool for methylation analysis

1 reference

12 December 2020

Functional analysis of a potassium-chloride co-transporter 3 (SLC12A6) promoter polymorphism leading to an additional DNA methylation site.

1 reference

12 December 2020

Genome-scale DNA methylation maps of pluripotent and differentiated cells

1 reference

12 December 2020

EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data

1 reference

12 December 2020

DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution

1 reference

12 December 2020

10.1007/978-1-60327-367-1_15

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6529944&resulttype=core&format=json

14 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6529944&resulttype=core&format=json

14 May 2020

20238087

1 reference