(Q33553343)

28 July 2017

title

A recombination hot spot in HIV-1 contains guanosine runs that can form a G-quartet structure and promote strand transfer in vitro (English)

1 reference

28 July 2017

Wen Shen

1

1 reference

28 July 2017

Lu Gao

series ordinal

2

1 reference

28 July 2017

Mini Balakrishnan

series ordinal

3

1 reference

28 July 2017

Robert A Bambara

series ordinal

4

1 reference

28 July 2017

language of work or name

English

0 references

publication date

12 October 2009

1 reference

Journal of Biological Chemistry

28 July 2017

published in

1 reference

28 July 2017

volume

284

1 reference

28 July 2017

issue

49

1 reference

28 July 2017

page(s)

33883-33893

1 reference

describes a project that uses

28 July 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2797159/fullTextXML

inferred from PubMed Central ID database lookup

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Pausing during reverse transcription increases the rate of retroviral recombination

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Dissection of a circumscribed recombination hot spot in HIV-1 after a single infectious cycle

21 June 2018

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Mutations in both env and gag genes are required for HIV-1 resistance to the polysulfonic dendrimer SPL2923, as corroborated by chimeric virus technology

21 June 2018

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Kinetic resolution of bimolecular hybridization versus intramolecular folding in nucleic acids by surface plasmon resonance: application to G-quadruplex/duplex competition in human c-myc promoter

21 June 2018

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Comparison of the genetic recombination rates of human immunodeficiency virus type 1 in macrophages and T cells

21 June 2018

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21 June 2018

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The structure of HIV-1 genomic RNA in the gp120 gene determines a recombination hot spot in vivo

21 June 2018

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Dimerization of retroviral RNA genomes: an inseparable pair.

21 June 2018

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Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

21 June 2018

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Dynamics of HIV-1 recombination in its natural target cells

21 June 2018

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Helix formation by guanylic acid

21 June 2018

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Template dimerization promotes an acceptor invasion-induced transfer mechanism during human immunodeficiency virus type 1 minus-strand synthesis

21 June 2018

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Amino acid substitutions in Gag protein at non-cleavage sites are indispensable for the development of a high multitude of HIV-1 resistance against protease inhibitors

21 June 2018

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The HIV-1 repeated sequence R as a robust hot-spot for copy-choice recombination

21 June 2018

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Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Lessons from human progeroid syndromes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Functional characterization of the dimer linkage structure RNA of Moloney murine sarcoma virus

21 June 2018

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Copy-choice recombination by reverse transcriptases: reshuffling of genetic markers mediated by RNA chaperones

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

High rate of recombination throughout the human immunodeficiency virus type 1 genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Moloney murine sarcoma virus genomic RNAs dimerize via a two-step process: a concentration-dependent kissing-loop interaction is driven by initial contact between consecutive guanines

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

A DNA polymerase stop assay for G-quadruplex-interactive compounds

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

HIV-1 gag proteins: diverse functions in the virus life cycle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Polyamide nucleic acid targeted to the primer binding site of the HIV-1 RNA genome blocks in vitro HIV-1 reverse transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Effects of cation substitutions on reverse transcriptase and on human immunodeficiency virus production

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Recombination leads to the rapid emergence of HIV-1 dually resistant mutants under selective drug pressure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Evidence for interstrand quadruplex formation in the dimerization of human immunodeficiency virus 1 genomic RNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

G-quartet structures in telomeric DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Strand transfer mediated by human immunodeficiency virus reverse transcriptase in vitro is promoted by pausing and results in misincorporation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Mutagenicity and pausing of HIV reverse transcriptase during HIV plus-strand DNA synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Werner's syndrome a review of its symptomatology, natural history, pathologic features, genetics and relationship to the natural aging process

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Physical properties of Rous Sarcoma Virus RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

HIV-1 isolates are rapidly evolving quasispecies: evidence for viral mixtures and preferred nucleotide substitutions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Monovalent cation-induced structure of telomeric DNA: the G-quartet model

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Human immunodeficiency virus 1 reverse transcriptase. Template binding, processivity, strand displacement synthesis, and template switching

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Four-stranded nucleic acid structures 25 years later: from guanosine gels to telomer DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Polymerization and RNase H activities of the reverse transcriptases from avian myeloblastosis, human immunodeficiency, and Moloney murine leukemia viruses are functionally uncoupled

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Retroviral Recombination and Reverse Transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Optimal conditions for synthesizing complementary DNA in the HIV-1 endogenous reverse transcriptase reaction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Dimerization of human immunodeficiency virus (type 1) RNA: stimulation by cations and possible mechanism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Requirements for strand transfer between internal regions of heteropolymer templates by human immunodeficiency virus reverse transcriptase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Fidelity of HIV-1 reverse transcriptase copying RNA in vitro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Effects of donor and acceptor RNA structures on the mechanism of strand transfer by HIV-1 reverse transcriptase.

21 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.055368

The kissing hairpin sequence promotes recombination within the HIV-I 5' leader region.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.055368

Reduced dNTP interaction of human immunodeficiency virus type 1 reverse transcriptase promotes strand transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.055368

Identification of a preferred region for recombination and mutation in HIV-1 gag.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.055368

APOBEC3G versus reverse transcriptase in the generation of HIV-1 drug-resistance mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.055368

Role of methionine 184 of human immunodeficiency virus type-1 reverse transcriptase in the polymerase function and fidelity of DNA synthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.055368

A Review of its Symptomatology, Natural History, Pathologic Features, Genetics And Relationship to the Natural Aging Process

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.055368

Template-directed pausing of DNA synthesis by HIV-1 reverse transcriptase during polymerization of HIV-1 sequences in vitro.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

The mechanism of human immunodeficiency virus reverse transcriptase-catalyzed strand transfer from internal regions of heteropolymeric RNA templates.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

Fidelity of HIV-1 reverse transcriptase

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2797159

A sodium-potassium switch in the formation of four-stranded G4-DNA

31 October 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.055368

Retroviral recombination is nonrandom and sequence dependent

21 January 2018

1 reference

12 December 2020

Strand transfer occurs in retroviruses by a pause-initiated two-step mechanism

1 reference

12 December 2020

Evidence for a mechanism of recombination during reverse transcription dependent on the structure of the acceptor RNA

1 reference

12 December 2020

A detailed model of reverse transcription and tests of crucial aspects

1 reference

12 December 2020

Mode of dimerization of HIV-1 genomic RNA

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M109.055368

1 reference

28 July 2017

1 reference

28 July 2017

1 reference