(Q33560380)

28 July 2017

title

Automated identification of neurons in 3D confocal datasets from zebrafish brainstem (English)

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28 July 2017

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M Kamali

1

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28 July 2017

L J Day

2

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28 July 2017

D H Brooks

3

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28 July 2017

X Zhou

4

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28 July 2017

D M O'Malley

5

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28 July 2017

publication date

1 January 2009

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28 July 2017

published in

Journal of Microscopy

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28 July 2017

volume

233

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28 July 2017

issue

1

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28 July 2017

page(s)

114-131

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Genetic dissection of neural circuits

28 July 2017

cites work

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21 June 2018

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Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy.

21 June 2018

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Molecular and morphological heterogeneity of neural precursors in the mouse neocortical proliferative zones.

21 June 2018

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Visual prey capture in larval zebrafish is controlled by identified reticulospinal neurons downstream of the tectum.

21 June 2018

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21 June 2018

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CoCoDat: a database system for organizing and selecting quantitative data on single neurons and neuronal microcircuitry

21 June 2018

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3D brain mapping using a deformable neuroanatomy

21 June 2018

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Automatic identification of subcellular phenotypes on human cell arrays

21 June 2018

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21 June 2018

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Cell lineage and cell fate specification in the embryonic CNS of Drosophila

21 June 2018

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Median-based robust algorithms for tracing neurons from noisy confocal microscope images

21 June 2018

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A gene expression atlas of the central nervous system based on bacterial artificial chromosomes

21 June 2018

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Interneuron Diversity series: Hippocampal interneuron classifications--making things as simple as possible, not simpler

21 June 2018

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From cells to circuits: development of the zebrafish spinal cord

21 June 2018

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Algorithms for accurate 3D registration of neuronal images acquired by confocal scanning laser microscopy

21 June 2018

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Automatic recognition of cell layers in corneal confocal microscopy images

21 June 2018

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Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain

21 June 2018

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Evidence for a widespread brain stem escape network in larval zebrafish

21 June 2018

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Confocal microscopy and stereology: estimating volume, number, surface area and length by virtual test probes applied to three-dimensional images

21 June 2018

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Neuronal diversity in the retina

21 June 2018

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Zebrafish mutants: behavioral genetic studies of visual system defects.

21 June 2018

1 reference

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Rapid lesioning of large numbers of identified vertebrate neurons: applications in zebrafish

21 June 2018

1 reference

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The Mauthner cell and other identified neurons of the brainstem escape network of fish

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Contributions of identifiable neurons and neuron classes to lamprey vertebrate neurobiology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Appreciating the difference between design-based and model-based sampling strategies in quantitative morphology of the nervous system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Laser ablations reveal functional relationships of segmental hindbrain neurons in zebrafish

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Monitoring activity in neuronal populations with single-cell resolution in a behaving vertebrate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Inducible and constitutive transcription factors in the mammalian nervous system: control of gene expression by Jun, Fos and Krox, and CREB/ATF proteins

21 June 2018

1 reference

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Combinatorial and chemotopic odorant coding in the zebrafish olfactory bulb visualized by optical imaging

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Imaging the functional organization of zebrafish hindbrain segments during escape behaviors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Heterogeneity of rat corticospinal neurons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Neocortical neuronal diversity: chemical heterogeneity revealed by colocalization studies of classic neurotransmitters, neuropeptides, calcium-binding proteins, and cell surface molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Intracellular staining of physiologically identified neurons and axons in the somatosensory thalamus of the cat.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Segmental homologies among reticulospinal neurons in the hindbrain of the zebrafish larva

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Suppressive control of the crustacean pyloric network by a pair of identified interneurons. I. Modulation of the motor pattern.

21 June 2018

1 reference

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Identification of spinal neurons in the embryonic and larval zebrafish

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Actions of identified neuromodulatory neurons in a simple motor system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Mauthner neuron field potential in newly hatched larvae of the zebra fish

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

An electrically mediated inhibition in goldfish medulla

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Correlation of the startle reflex and Mauthner cell auditory responses in unrestrained goldfish

21 June 2018

1 reference

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Image registration based on boundary mapping.

21 June 2018

1 reference

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Targeting neural circuitry in zebrafish using GAL4 enhancer trapping.

31 October 2018

1 reference

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Implications of neuronal diversity on population coding

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Brain architecture management system

31 October 2018

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Functional imaging reveals rapid development of visual response properties in the zebrafish tectum.

31 October 2018

1 reference

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Common sensory inputs and differential excitability of segmentally homologous reticulospinal neurons in the hindbrain.

31 October 2018

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31 October 2018

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Neuronal differentiation patterns in the optic tectum of the lizard Gallotia galloti

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Probing neural circuits in the zebrafish: a suite of optical techniques

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Visually guided injection of identified reticulospinal neurons in zebrafish: a survey of spinal arborization patterns

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Glutamic acid decarboxylase-immunoreactivity of bulbar respiratory neurons identified by intracellular recording and labeling in rats

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

In vivo recording from identifiable neurons of the locomotor network in the developing zebrafish

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Neuronal diversity: too many cell types for comfort?

31 October 2018

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Sensory neuron number in neonatal and adult rats estimated by means of stereologic and profile-based methods.

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Metamorphosis of spinal-projecting neurons in the brain of the sea lamprey during transformation of the larva to adult: normal anatomy and response to axotomy.

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798854

Long distance axonal regeneration of identified lamprey reticulospinal neurons

31 October 2018

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T reticular interneurons: a class of serially repeating cells in the zebrafish hindbrain

31 October 2018

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Brain neurons which project to the spinal cord in young larvae of the zebrafish

31 October 2018

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Visualization of active neural circuitry in the spinal cord of intact zebrafish

31 October 2018

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12 December 2020

A confocal study of spinal interneurons in living larval zebrafish

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12 December 2020

Extreme diversity among amacrine cells: implications for function

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12 December 2020

Neuronal Controls of a Behavioral Response Mediated by the Abdominal Ganglion of Aplysia

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12 December 2020

Encoding and decoding of reticulospinal commands

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12 December 2020

Physiological and anatomical studies on large neurons of central nervous system of the sea lamprey (Petromyzon marinus). I. Müller and Mauthner cells

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12 December 2020

Neuronal control of swimming in the medicinal leech. IV. Identification of a network of oscillatory interneurones

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12 December 2020

Specificity of synaptic regeneration in the spinal cord of the larval sea lamprey

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12 December 2020

Axogenesis in the embryonic brain of the grasshopper Schistocerca gregaria: an identified cell analysis of early brain development

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12 December 2020

Two inhibitory mechanisms in the Mauthner neurons of goldfish

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12 December 2020

10.1111/J.1365-2818.2008.03102.X

Identifiers

DOI

1 reference

28 July 2017

1 reference

28 July 2017

1 reference