(Q33589552)

28 July 2017

title

Using distances between Top-n-gram and residue pairs for protein remote homology detection (English)

1 reference

28 July 2017

1 reference

Bin Liu

1

1 reference

28 July 2017

Jinghao Xu

2

1 reference

28 July 2017

Quan Zou

3

1 reference

28 July 2017

Ruifeng Xu

4

1 reference

28 July 2017

Xiaolong Wang

5

1 reference

28 July 2017

Qingcai Chen

6

1 reference

28 July 2017

language of work or name

1 reference

24 January 2014

1 reference

28 July 2017

1 reference

28 July 2017

volume

15 Suppl 2

1 reference

28 July 2017

page(s)

S3

1 reference

An approach for identifying cytokines based on a novel ensemble classifier.

28 July 2017

cites work

1 reference

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Using amino acid physicochemical distance transformation for fast protein remote homology detection

21 June 2018

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BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles

21 June 2018

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21 June 2018

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An improved profile-level domain linker propensity index for protein domain boundary prediction

21 June 2018

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Prediction of protein binding sites in protein structures using hidden Markov support vector machine

21 June 2018

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COMPASS server for homology detection: improved statistical accuracy, speed and functionality.

21 June 2018

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webPRC: the Profile Comparer for alignment-based searching of public domain databases

21 June 2018

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Protein structure prediction on the Web: a case study using the Phyre server

21 June 2018

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A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis

21 June 2018

1 reference

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Remote protein homology detection using recurrence quantification analysis and amino acid physicochemical properties.

21 June 2018

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21 June 2018

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A discriminative method for remote homology detection based on n-peptide compositions with reduced amino acid alphabets

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Application of latent semantic analysis to protein remote homology detection

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Identifying remote protein homologs by network propagation

21 June 2018

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Profile-based string kernels for remote homology detection and motif extraction

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Protein homology detection by HMM-HMM comparison

21 June 2018

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SCOP database in 2004: refinements integrate structure and sequence family data

21 June 2018

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Molecular features of the copper binding sites in the octarepeat domain of the prion protein

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Using the Fisher kernel method to detect remote protein homologies.

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

The ASTRAL compendium for protein structure and sequence analysis

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Twilight zone of protein sequence alignments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Hidden Markov models for detecting remote protein homologies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

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Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Remote protein homology detection and fold recognition using two-layer support vector machine classifiers

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Protein remote homology detection based on auto-cross covariance transformation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination

31 October 2018

1 reference

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SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Remote homology detection based on oligomer distances

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Profile-based direct kernels for remote homology detection and fold recognition

31 October 2018

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Mismatch string kernels for discriminative protein classification

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Protein homology detection using string alignment kernels

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Combining pairwise sequence similarity and support vector machines for detecting remote protein evolutionary and structural relationships.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

FORTE: a profile-profile comparison tool for protein fold recognition.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Efficient remote homology detection using local structure.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

The spectrum kernel: a string kernel for SVM protein classification.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015815

Remote homology detection: a motif based approach

31 October 2018

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12 December 2020

Remote homolog detection using local sequence-structure correlations

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12 December 2020

Exploiting three kinds of interface propensities to identify protein binding sites

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12 December 2020

COMA server for protein distant homology search

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12 December 2020

Protein Remote Homology Detection by Combining Chou's Pseudo Amino Acid Composition and Profile-Based Protein Representation

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12 December 2020

DrugBank: a knowledgebase for drugs, drug actions and drug targets

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5 May 2024

https://opencitations.net/index/api/v1/citations/10.1093/NAR/GKM958

Identifiers

DOI

10.1186/1471-2105-15-S4-S3

1 reference

28 July 2017

1 reference

28 July 2017

1 reference