(Q33589608)

English

Discord between morphological and phylogenetic species boundaries: incomplete lineage sorting and recombination results in fuzzy species boundaries in an asexual fungal pathogen

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Discord between morphological and phylogenetic species boundaries: incomplete lineage sorting and recombination results in fuzzy species boundaries in an asexual fungal pathogen (English)

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

1 reference

based on heuristic

inferred from title

author name string

Jane E Stewart

1

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Lavern W Timmer

2

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Christopher B Lawrence

3

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Barry M Pryor

4

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Tobin L Peever

5

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

publication date

3 March 2014

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

BMC Evolutionary Biology

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

14

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

38

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

https://scigraph.springernature.com/pub.10.1186/1471-2148-14-38

0 references

Host-Specific Toxins and Chemical Structures from Alternaria Species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Species-specific PCR to describe local-scale distributions of four cryptic species in the Penicillium chrysogenum complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

The sections of Alternaria: formalizing species-group concepts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Signatures of recombination in clonal lineages of the citrus brown spot pathogen, Alternaria alternata sensu lato

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Fungal systematics: is a new age of enlightenment at hand?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Inferring the evolutionary history of IncP-1 plasmids despite incongruence among backbone gene trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Host-selective toxins produced by the plant pathogenic fungus Alternaria alternata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Species delimitation and global biosecurity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Contrasting codon usage patterns and purifying selection at the mating locus in putatively asexual alternaria fungal species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Cryptic speciation in Fusarium subglutinans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Molecular and phenotypic description of Coccidioides posadasii sp. nov., previously recognized as the non-California population of Coccidioides immitis

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Using phylogenetic species recognition to delimit species boundaries within Lasiosphaeria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Species tree discordance traces to phylogeographic clade boundaries in North American fence lizards (Sceloporus)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Bayesian inference of species trees from multilocus data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

An expanded multilocus phylogeny does not resolve morphological species within the small-spored Altemrnaria species complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Citrus Black Rot is Caused by Phylogenetically Distinct Lineages of Alternaria alternata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Multilocus phylogenetics of a rapid radiation in the genus Thomomys (Rodentia: Geomyidae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Recent divergence with gene flow in Tennessee cave salamanders (Plethodontidae: Gyrinophilus ) inferred from gene genealogies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Inconsistency of phylogenetic estimates from concatenated data under coalescence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Discordance of species trees with their most likely gene trees.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

SNAP: Combine and Map modules for multilocus population genetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Inferring phylogeny despite incomplete lineage sorting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Nuclear ribosomal DNA variation and pathogenic specialization in alternaria fungi known to produce host-specific toxins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Mechanisms of fungal speciation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

DnaSP, DNA polymorphism analyses by the coalescent and other methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Shared ITS DNA substitutions in isolates of opposite mating type reveal a recombining history for three presumed asexual species in the filamentous ascomycete genus Alternaria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

MRBAYES: Bayesian inference of phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Phylogenetic species recognition and species concepts in fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Inference from gene trees in a subdivided population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Primer3 on the WWW for general users and for biologist programmers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Evolution of the fungal self-fertile reproductive life style from self-sterile ancestors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Phylogenetic relationships of varieties and geographical groups of the human pathogenic fungus Histoplasma capsulatum Darling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Concordance of gene genealogies reveals reproductive isolation in the pathogenic fungus Coccidioides immitis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

A coalescent estimator of the population recombination rate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Ancestral inference from samples of DNA sequences with recombination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Statistical properties of the number of recombination events in the history of a sample of DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

Relationships between gene trees and species trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

An evaluation of the molecular clock hypothesis using mammalian DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

21 June 2018

THE EVOLUTION OF ASEXUAL FUNGI: Reproduction, Speciation and Classification

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Species trees from highly incongruent gene trees in rice.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Speciation despite globally overlapping distributions in Penicillium chrysogenum: the population genetics of Alexander Fleming's lucky fungus.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Worldwide Phylogeography of the Citrus Brown Spot Pathogen, Alternaria alternata

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Performance-based selection of likelihood models for phylogeny estimation

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

SNAP: workbench management tool for evolutionary population genetic analysis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

AUGIST: inferring species trees while accommodating gene tree uncertainty

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Multilocus phylogenetic structure within the Trichoderma harzianum/Hypocrea lixii complex.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Molecular karyotypes for Alternaria plant pathogens known to produce host-specific toxins.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Distribution and Characterization of AKT Homologs in the Tangerine Pathotype of Alternaria alternata.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Genealogical concordance between the mating type locus and seven other nuclear genes supports formal recognition of nine phylogenetically distinct species within the Fusarium graminearum clade

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Discordance of species trees with their most likely gene trees: the case of five taxa.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-38

21 January 2018

Cryptic species in Stachybotrys chartarum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

31 October 2018

Molecular systematics of citrus-associated Alternaria species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

31 October 2018

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

31 October 2018

Gene tree distributions under the coalescent process

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

31 October 2018

Endopolygalacturonase is essential for citrus black rot caused by Alternaria citri but not brown spot caused by Alternaria alternata.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015827

31 October 2018

An Isolate of Alternaria alternata That Is Pathogenic to Both Tangerines and Rough Lemon and Produces Two Host-Selective Toxins, ACT- and ACR-Toxins

1 reference

https://pubmed.ncbi.nlm.nih.gov/24593138

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimation of nucleotide substitution rates in Eurotiomycete fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/24593138

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Population Genetic Structure and Host Specificity of Alternaria spp. Causing Brown Spot of Minneola Tangelo and Rough Lemon in Florida

1 reference

https://pubmed.ncbi.nlm.nih.gov/24593138

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2148-14-38

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-14-38

9 September 2019

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q33589608&oldid=1957427331"