(Q33619865)

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In vivo, high-resolution analysis of yeast and mammalian RNA-protein interactions, RNA structure, RNA splicing and ribozyme cleavage by use of terminal transferase-dependent PCR.

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scholarly article

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Europe PubMed Central

PubMed publication ID

28 July 2017

In vivo, high-resolution analysis of yeast and mammalian RNA-protein interactions, RNA structure, RNA splicing and ribozyme cleavage by use of terminal transferase-dependent PCR. (English)

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

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author name string

H H Chen

1

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

D Castanotto

2

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

J M LeBon

3

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

J J Rossi

4

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

A D Riggs

5

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Europe PubMed Central

PubMed publication ID

28 July 2017

language of work or name

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publication date

1 April 2000

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Europe PubMed Central

PubMed publication ID

28 July 2017

Nucleic Acids Research

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Europe PubMed Central

PubMed publication ID

28 July 2017

28

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

7

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

1656-1664

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Use of terminal transferase-dependent antisense RNA amplification to determine the transcription start site of the Snrpn gene in individual neurons

1 reference

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Chromatin structure analysis by ligation-mediated and terminal transferase-mediated polymerase chain reaction

1 reference

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

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High-temperature, nonradioactive primer extension assay for determination of a transcription-initiation site.

1 reference

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Terminal transferase-dependent PCR: a versatile and sensitive method for in vivo footprinting and detection of DNA adducts

1 reference

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The structural basis of hammerhead ribozyme self-cleavage

1 reference

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Iron regulatory element and internal loop/bulge structure for ferritin mRNA studied by cobalt(III) hexammine binding, molecular modeling, and NMR spectroscopy

1 reference

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Structure and dynamics of the iron responsive element RNA: implications for binding of the RNA by iron regulatory binding proteins

1 reference

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Betaine improves the PCR amplification of GC-rich DNA sequences

1 reference

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Ligation-mediated PCR for chromatin-structure analysis of interphase and metaphase chromatin

1 reference

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Identification and characterization of yeast mutants that overcome an experimentally introduced block to splicing at the 3' splice site

1 reference

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Controlled ribonucleotide tailing of cDNA ends (CRTC) by terminal deoxynucleotidyl transferase: a new approach in PCR-mediated analysis of mRNA sequences

1 reference

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Rapid amplification of complementary DNA ends for generation of full-length complementary DNAs: thermal RACE.

1 reference

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Visualization of the interaction of a regulatory protein with RNA in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

21 June 2018

Oxidative base damage in RNA detected by reverse transcriptase

1 reference

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Detection of ribonuclease H-generated mRNA fragments in human leukemia cells following reversible membrane permeabilization in the presence of antisense oligodeoxynucleotides.

1 reference

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Human hepatocellular carcinoma cell lines secrete the major plasma proteins and hepatitis B surface antigen

1 reference

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21 June 2018

Identification of the iron-responsive element for the translational regulation of human ferritin mRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

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A cytosolic protein binds to structural elements within the iron regulatory region of the transferrin receptor mRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

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Probing the structure of RNAs in solution

1 reference

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In vivo footprint and methylation analysis by PCR-aided genomic sequencing: comparison of active and inactive X chromosomal DNA at the CpG island and promoter of human PGK-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

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Unexpected point mutations activate cryptic 3' splice sites by perturbing a natural secondary structure within a yeast intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

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RNA-protein interactions in the Escherichia coli ribosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

21 June 2018

Sequence requirements of the hammerhead RNA self-cleavage reaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

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The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

21 June 2018

Expression of a chimeric ribozyme gene results in endonucleolytic cleavage of target mRNA and a concomitant reduction of gene expression in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

21 June 2018

Unusual interactions between cleavage products of a cis-cleaving hammerhead ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

30 October 2018

Structural similarities between hammerhead ribozymes and the spliceosomal RNAs could be responsible for lack of ribozyme cleavage in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102785

30 October 2018

Lariat structures are in vivo intermediates in yeast pre-mRNA splicing.

1 reference

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Detection of ribozyme cleavage products using reverse ligation-mediated PCR (RL-PCR)

1 reference

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A conformational change in the catalytic core of the hammerhead ribozyme upon cleavage of an RNA substrate

1 reference

https://pubmed.ncbi.nlm.nih.gov/10710433

12 December 2020

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10.1093/NAR/28.7.1656

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

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