(Q33633542)

28 July 2017

title

Long-range bidirectional strand asymmetries originate at CpG islands in the human genome (English)

1 reference

28 July 2017

1 reference

Paz Polak

1

1 reference

28 July 2017

Peter F Arndt

series ordinal

2

1 reference

28 July 2017

language of work or name

1 reference

3 August 2009

1 reference

Genome Biology and Evolution

28 July 2017

published in

1 reference

28 July 2017

volume

1

1 reference

28 July 2017

page(s)

189-197

1 reference

Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs

28 July 2017

cites work

1 reference

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Genome-wide studies highlight indirect links between human replication origins and gene regulation.

14 July 2018

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Dividing the workload at a eukaryotic replication fork

14 July 2018

1 reference

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The organization of the bacterial genome.

14 July 2018

1 reference

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The impact of recombination on nucleotide substitutions in the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

Transcription induces strand-specific mutations at the 5' end of human genes

14 July 2018

1 reference

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Overreplication of short DNA regions during S phase in human cells

14 July 2018

1 reference

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The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases

14 July 2018

1 reference

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Computational epigenetics

14 July 2018

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14 July 2018

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From GC skews to wavelets: a gentle guide to the analysis of compositional asymmetries in genomic data

14 July 2018

1 reference

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A second generation human haplotype map of over 3.1 million SNPs

14 July 2018

1 reference

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Human gene organization driven by the coordination of replication and transcription.

14 July 2018

1 reference

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Replication in context: dynamic regulation of DNA replication patterns in metazoans

14 July 2018

1 reference

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

14 July 2018

1 reference

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Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution

14 July 2018

1 reference

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14 July 2018

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A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

Control of gene expression by CpG island methylation in normal cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

Comprehensive analysis of the base composition around the transcription start site in Metazoa

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

Likelihood Analysis of Asymmetrical Mutation Bias Gradients in Vertebrate Mitochondrial Genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

14 July 2018

DNA replication fidelity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

CpG islands as genomic footprints of promoters that are associated with replication origins.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

Strand compositional asymmetry in bacterial and large viral genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

Asymmetric substitution patterns in the two DNA strands of bacteria

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

Initiation of DNA replication at CpG islands in mammalian chromosomes

14 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP024

Transcription-associated mutational asymmetry in mammalian evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP024

Properties of a general model of DNA evolution under no-strand-bias conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP024

Recombination drives the evolution of GC-content in the human genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP024

The relationship between DNA replication and human genome organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP024

Essentiality, not expressiveness, drives gene-strand bias in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP024

Quantifying the stationarity and time reversibility of the nucleotide substitution process.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP024

In silico prediction of the origin of replication among bacteria: a case study of Bacteroides thetaiotaomicron.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817419

Fidelity of mammalian DNA replication and replicative DNA polymerases

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20333189

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVP024

1 reference

28 July 2017

1 reference

28 July 2017

1 reference