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Nhp6: a small but powerful effector of chromatin structure in Saccharomyces cerevisiae
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Europe PubMed Central
PMC publication ID
2818483
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20123079%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
review article
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stated in
Europe PubMed Central
title
Nhp6: a small but powerful effector of chromatin structure in Saccharomyces cerevisiae
(English)
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stated in
Europe PubMed Central
PMC publication ID
2818483
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20123079%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
main subject
non-sequence-specific DNA binding, bending
1 reference
stated in
Gene Ontology release 2020-05-02
Gene Ontology ID
GO:0044378
Saccharomyces cerevisiae
1 reference
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inferred from title
author
David J. Stillman
series ordinal
1
1 reference
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Europe PubMed Central
PMC publication ID
2818483
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20123079%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
author name string
David J Stillman
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed publication ID
20123079
retrieved
28 July 2017
language of work or name
English
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publication date
1 January 2010
1 reference
stated in
Europe PubMed Central
PMC publication ID
2818483
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20123079%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
published in
Biochimica et Biophysica Acta
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stated in
Europe PubMed Central
PMC publication ID
2818483
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20123079%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
volume
1799
1 reference
stated in
Europe PubMed Central
PMC publication ID
2818483
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20123079%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
issue
1-2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2818483
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20123079%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
page(s)
175-180
1 reference
stated in
Europe PubMed Central
PMC publication ID
2818483
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20123079%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
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Modulation of the DNA-binding activity of Saccharomyces cerevisiae MSH2-MSH6 complex by the high-mobility group protein NHP6A, in vitro
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PubMed Central
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The E2F functional analogue SBF recruits the Rpd3(L) HDAC, via Whi5 and Stb1, and the FACT chromatin reorganizer, to yeast G1 cyclin promoters
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21 June 2018
yFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement
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21 June 2018
FACT and the proteasome promote promoter chromatin disassembly and transcriptional initiation.
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21 June 2018
FACT and Asf1 regulate nucleosome dynamics and coactivator binding at the HO promoter
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21 June 2018
FACT and the reorganized nucleosome
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PubMed Central
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21 June 2018
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
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21 June 2018
An in vivo map of the yeast protein interactome
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PubMed Central
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21 June 2018
Nhp6p and Med3p regulate gene expression by controlling the local subunit composition of RNA polymerase II.
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PubMed Central
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21 June 2018
RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
The High Mobility Group Box Transcription Factor Nhp6Ap enters the nucleus by a calmodulin-dependent, Ran-independent pathway
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Exploring genetic interactions and networks with yeast
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PubMed Central
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21 June 2018
Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map
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PubMed Central
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21 June 2018
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
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PubMed Central
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21 June 2018
Requirement of Nhp6 proteins for transcription of a subset of tRNA genes and heterochromatin barrier function in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Opposing roles for Set2 and yFACT in regulating TBP binding at promoters
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Nhp6 is a transcriptional initiation fidelity factor for RNA polymerase III transcription in vitro and in vivo
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Genetic interactions between Nhp6 and Gcn5 with Mot1 and the Ccr4-Not complex that regulate binding of TATA-binding protein in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Role for Nhp6, Gcn5, and the Swi/Snf complex in stimulating formation of the TATA-binding protein-TFIIA-DNA complex
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
TATA-binding protein mutants that are lethal in the absence of the Nhp6 high-mobility-group protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Nhp6 facilitates Aft1 binding and Ssn6 recruitment, both essential for FRE2 transcriptional activation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Multiple Nhp6 molecules are required to recruit Spt16-Pob3 to form yFACT complexes and to reorganize nucleosomes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
The nuclear actin-related proteins Arp7 and Arp9: a dimeric module that cooperates with architectural proteins for chromatin remodeling
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Priming the nucleosome: a role for HMGB proteins?
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Regulation of TATA-binding protein binding by the SAGA complex and the Nhp6 high-mobility group protein.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Defects in SPT16 or POB3 (yFACT) in Saccharomyces cerevisiae cause dependence on the Hir/Hpc pathway: polymerase passage may degrade chromatin structure.
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PubMed Central
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21 June 2018
The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Functional profiling of the Saccharomyces cerevisiae genome
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Functional organization of the yeast proteome by systematic analysis of protein complexes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
HMG proteins and DNA flexibility in transcription activation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
A novel upstream RNA polymerase III promoter element becomes essential when the chromatin structure of the yeast U6 RNA gene is altered
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
High-mobility-group proteins NHP6A and NHP6B participate in activation of the RNA polymerase III SNR6 gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Revised nomenclature for high mobility group (HMG) chromosomal proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Nhp6, an HMG1 protein, functions in SNR6 transcription by RNA polymerase III in S. cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Chromatin-mediated transcriptional regulation by the yeast architectural factors NHP6A and NHP6B.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
A new screen for protein interactions reveals that the Saccharomyces cerevisiae high mobility group proteins Nhp6A/B are involved in the regulation of the GAL1 promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Architectural transcription factors and the SAGA complex function in parallel pathways to activate transcription
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
The MSN1 and NHP6A genes suppress SWI6 defects in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Determinants of DNA binding and bending by the Saccharomyces cerevisiae high mobility group protein NHP6A that are important for its biological activities. Role of the unique N terminus and putative intercalating methionine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
Architectural DNA binding by a high-mobility-group/kinesin-like subunit in mammalian SWI/SNF-related complexes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Marginal fitness contributions of nonessential genes in yeast
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
Characterization of a high mobility group 1/2 homolog in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
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21 June 2018
Functional analysis of the genes of yeast chromosome V by genetic footprinting
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
Yeast HMG proteins NHP6A/B potentiate promoter-specific transcriptional activation in vivo and assembly of preinitiation complexes in vitro
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
Evidence that Spt6p controls chromatin structure by a direct interaction with histones
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
Essential role of the HMG domain in the function of yeast mitochondrial histone HM: functional complementation of HM by the nuclear nonhistone protein NHP6A.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
NHP6A and NHP6B, which encode HMG1-like proteins, are candidates for downstream components of the yeast SLT2 mitogen-activated protein kinase pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
Yeast Taf170 is encoded by MOT1 and exists in a TATA box-binding protein (TBP)-TBP-associated factor complex distinct from transcription factor IID.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
An efficient method to isolate yeast genes causing overexpression-mediated growth arrest
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
DNA looping by Saccharomyces cerevisiae high mobility group proteins NHP6A/B. Consequences for nucleoprotein complex assembly and chromatin condensation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
Concentrations of high-mobility-group proteins in the nucleus and cytoplasm of several rat tissues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
Duplicated NHP6 genes of Saccharomyces cerevisiae encode proteins homologous to bovine high mobility group protein 1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
21 June 2018
Histone chaperone spt16 promotes redeposition of the original h3-h4 histones evicted by elongating RNA polymerase.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
30 October 2018
Enhancement of DNA flexibility in vitro and in vivo by HMGB box A proteins carrying box B residues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
30 October 2018
Non-histone proteins Nhp6A and Nhp6B are required for the regulated expression of SUC2 gene of Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
30 October 2018
Binding to cisplatin-modified DNA by the Saccharomyces cerevisiae HMGB protein Nhp6A.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818483
retrieved
30 October 2018
SPT3 interacts with TFIID to allow normal transcription in Saccharomyces cerevisiae
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20123079
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Gene dosage affects the expression of the duplicated NHP6 genes of Saccharomyces cerevisiae
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20123079
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Nuclear localization of the Saccharomyces cerevisiae HMG protein NHP6A occurs by a Ran-independent nonclassical pathway
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20123079
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Mutations in the yeast Nhp6 protein can differentially affect its in vivo functions
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20123079
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.BBAGRM.2009.11.010
1 reference
stated in
Europe PubMed Central
PMC publication ID
2818483
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20123079%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
Fatcat ID
release_gpuqgffa6vhcbohk2lhwscqqia
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/gpuqgffa6vhcbohk2lhwscqqia
retrieved
24 November 2022
based on heuristic
mapped directly with Wikidata item
PMC publication ID
2818483
1 reference
stated in
Europe PubMed Central
PMC publication ID
2818483
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20123079%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
PubMed publication ID
20123079
1 reference
stated in
Europe PubMed Central
PMC publication ID
2818483
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20123079%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
ResearchGate publication ID
41398314
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