(Q33654100)

28 July 2017

A Bayesian approach to the evolution of metabolic networks on a phylogeny (English)

1 reference

28 July 2017

1 reference

1 reference

2

1 reference

28 July 2017

Aziz Mithani

1

1 reference

PubMed ID

20700467

28 July 2017

Jotun Hein

series ordinal

3

1 reference

PubMed ID

20700467

28 July 2017

language of work or name

1 reference

5 August 2010

1 reference

PLOS Computational Biology

28 July 2017

1 reference

28 July 2017

6

1 reference

28 July 2017

8

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

start time

5 August 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

A stochastic model for the evolution of metabolic networks with neighbor dependence

1 reference

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KEGG for linking genomes to life and the environment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917375

Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum

21 June 2018

1 reference

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Estimation of the number of extreme pathways for metabolic networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917375

A likelihood approach to analysis of network data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917375

Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917375

Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications

21 June 2018

1 reference

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PathBLAST: a tool for alignment of protein interaction networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917375

Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917375

Conserved pathways within bacteria and yeast as revealed by global protein network alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917375

The phylogenetic extent of metabolic enzymes and pathways

21 June 2018

1 reference

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Evolutionary HMMs: a Bayesian approach to multiple alignment

21 June 2018

1 reference

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Pathway alignment: application to the comparative analysis of glycolytic enzymes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917375

Comparative genomics of BCG vaccines by whole-genome DNA microarray

21 June 2018

1 reference

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Evolutionary trees from DNA sequences: A maximum likelihood approach

21 June 2018

1 reference

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21 June 2018

Evolution of Networks

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000868

Adaptive evolution of bacterial metabolic networks by horizontal gene transfer.

21 January 2018

1 reference

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Sampling-Based Approaches to Calculating Marginal Densities

21 January 2018

1 reference

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Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images

21 January 2018

2 references

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21 January 2018

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Equation of State Calculations by Fast Computing Machines

30 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000868

Monte Carlo sampling methods using Markov chains and their applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000868

Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison.

21 January 2018

1 reference

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Pseudomonas syringae pv. tomato DC3000 uses constitutive and apoplast-induced nutrient assimilation pathways to catabolize nutrients that are abundant in the tomato apoplast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000868

Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000868

Deriving phylogenetic trees from the similarity analysis of metabolic pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000868

Complex networks: Structure and dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000868

Bayesian inference for dynamic social network data

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000868

Evolution of metabolisms: a new method for the comparison of metabolic pathways using genomics information

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20700467

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Pathway alignment: application to the comparative analysis of glycolytic enzymes

1 reference

5 June 2022

https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PCBI.1000868

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000868

1 reference

journals/ploscb/MithaniPH10

28 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

28 July 2017

1 reference

PubMed ID

20700467