(Q33685234)

28 July 2017

title

Internal proton transfer in the external pyridoxal 5'-phosphate Schiff base in dopa decarboxylase (English)

1 reference

28 July 2017

Yen-lin Lin

1

1 reference

28 July 2017

Jiali Gao

series ordinal

2

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28 July 2017

language of work or name

English

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publication date

1 January 2010

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28 July 2017

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28 July 2017

volume

49

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28 July 2017

issue

1

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28 July 2017

page(s)

84-94

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Improving the QM/MM Description of Chemical Processes: A Dual Level Strategy To Explore the Potential Energy Surface in Very Large Systems

28 July 2017

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21 June 2018

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21 June 2018

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21 June 2018

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15N nuclear magnetic resonance studies of acid-base properties of pyridoxal-5'-phosphate aldimines in aqueous solution.

21 June 2018

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A combined quantum mechanical and molecular mechanical study of the reaction mechanism and alpha-amino acidity in alanine racemase

21 June 2018

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21 June 2018

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NMR studies of solvent-assisted proton transfer in a biologically relevant Schiff base: toward a distinction of geometric and equilibrium H-bond isotope effects.

21 June 2018

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Modeling structurally variable regions in homologous proteins with rosetta.

21 June 2018

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Tautomeric equilibria of pyridoxal-5'-phosphate (vitamin B6) and 3-hydroxypyridine derivatives: a theoretical study of solvation effects

21 June 2018

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Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction

21 June 2018

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Structural insight into Parkinson's disease treatment from drug-inhibited DOPA decarboxylase

21 June 2018

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Uracil-DNA glycosylase acts by substrate autocatalysis

21 June 2018

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Modeling of loops in protein structures

21 June 2018

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Acid-base chemistry of the reaction of aromatic L-amino acid decarboxylase and dopa analyzed by transient and steady-state kinetics: preferential binding of the substrate with its amino group unprotonated

21 June 2018

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Determination of the structure of alanine racemase from Bacillus stearothermophilus at 1.9-A resolution

21 June 2018

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Rat liver aromatic L-amino acid decarboxylase: spectroscopic and kinetic analysis of the coenzyme and reaction intermediates

21 June 2018

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Mechanism of action of aspartate aminotransferase proposed on the basis of its spatial structure

21 June 2018

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Purification of L-dopa decarboxylase from rat liver and production of polyclonal and monoclonal antibodies against it.

21 June 2018

1 reference

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Purification and characterization of rat-liver 3,4-dihydroxyphenylalanine decarboxylase

21 June 2018

1 reference

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Structure of the triosephosphate isomerase-phosphoglycolohydroxamate complex: an analogue of the intermediate on the reaction pathway

21 June 2018

1 reference

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A priori evaluation of aqueous polarization effects through Monte Carlo QM-MM simulations.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

Reactions of DOPA (3,4-dihydroxyphenylalanine) decarboxylase with DOPA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

Purification and Characterization of 3,4-Dihydroxyphenylalanine Decarboxylase from Pig Kidney

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

An Efficient Linear-Scaling Ewald Method for Long-Range Electrostatic Interactions in Combined QM/MM Calculations.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

Rapid photodynamics of vitamin B6 coenzyme pyridoxal 5'-phosphate and its Schiff bases in solution

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

The reaction mechanism of paraoxon hydrolysis by phosphotriesterase from combined QM/MM simulations

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

NMR studies of coupled low- and high-barrier hydrogen bonds in pyridoxal-5'-phosphate model systems in polar solution.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

Quantum mechanical continuum solvation models.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

A combined QM/MM approach to protein--ligand interactions: polarization effects of the HIV-1 protease on selected high affinity inhibitors

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

Reaction-path energetics and kinetics of the hydride transfer reaction catalyzed by dihydrofolate reductase

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

Polarographic identification of the reactive form in the hydrolysis of pyridoxal 5-phosphate

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

Ab initio construction of polypeptide fragments: efficient generation of accurate, representative ensembles.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

Mutation of residues in the coenzyme binding pocket of Dopa decarboxylase. Effects on catalytic properties

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

Structure modelling and site-directed mutagenesis of the rat aromatic L-amino acid pyridoxal 5'-phosphate-dependent decarboxylase: a functional study

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827857

Evidence for a two-base mechanism involving tyrosine-265 from arginine-219 mutants of alanine racemase

30 October 2018

1 reference

12 December 2020

Interaction of L-DOPA decarboxylase with substrates: a spectrophotometric study

1 reference

12 December 2020

Spectral properties of the coenzyme bound to DOPA decarboxylase from pig kidney

1 reference

12 December 2020

Neutral and ionic hydrogen bonding in Schiff bases

1 reference

12 December 2020

Tautomerism of sterically hindered schiff bases. Deuterium isotope effects on 13C chemical shifts

1 reference

12 December 2020

Coupling of Functional Hydrogen Bonds in Pyridoxal-5‘-phosphate−Enzyme Model Systems Observed by Solid-State NMR Spectroscopy

1 reference

12 December 2020

Improved Methods for Side Chain and Loop Predictions via the Protein Local Optimization Program: Variable Dielectric Model for Implicitly Improving the Treatment of Polarization Effects.

1 reference

12 December 2020

A QM/MM Exploration of the Potential Energy Surface of Pyruvate to Lactate Transformation Catalyzed by LDH. Improving the Accuracy of Semiempirical Descriptions

1 reference

12 December 2020

Constitutive aromatic L-amino acid decarboxylase from Micrococcus percitreus

1 reference

12 December 2020

Inhibitors binding to L-aromatic amino acid decarboxylase

1 reference

12 December 2020

2-Amino-3-ketobutyrate-CoA ligase from beef liver mitochondria: an NMR spectroscopic study of low-barrier hydrogen bonds of a pyridoxal 5'-phosphate-dependent enzyme

1 reference

12 December 2020

Simulation of the enzyme reaction mechanism of malate dehydrogenase

1 reference

12 December 2020

Identifiers

DOI

10.1021/BI901790E

1 reference

28 July 2017

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28 July 2017

1 reference