(Q33685521)

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Photochemistry of visual pigment in a G(q) protein-coupled receptor (GPCR)--insights from structural and spectral tuning studies on squid rhodopsin

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Photochemistry of visual pigment in a G(q) protein-coupled receptor (GPCR)--insights from structural and spectral tuning studies on squid rhodopsin (English)

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

G protein-coupled receptor

0 references

author name string

Sivakumar Sekharan

1

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Ahmet Altun

2

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Keiji Morokuma

3

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

language of work or name

0 references

publication date

1 February 2010

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Chemistry—A European Journal

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

16

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

1744-1749

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Conserved waters mediate structural and functional activation of family A (rhodopsin-like) G protein-coupled receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Mechanism of spectral tuning going from retinal in vacuo to bovine rhodopsin and its mutants: multireference ab initio quantum mechanics/molecular mechanics studies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Water-mediated spectral shifts in rhodopsin and bathorhodopsin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Glutamic acid 181 is uncharged in dark-adapted visual rhodopsin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Crystal structure of squid rhodopsin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Spectral tuning in visual pigments: an ONIOM(QM:MM) study on bovine rhodopsin and its mutants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Crystal Structure of Squid Rhodopsin with Intracellularly Extended Cytoplasmic Region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Determination of solvent content in cavities in IL-1beta using experimentally phased electron density

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Color Tuning in Rhodopsins: The Mechanism for the Spectral Shift between Bacteriorhodopsin and Sensory Rhodopsin II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Ground and excited states of retinal schiff base chromophores by multiconfigurational perturbation theory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Computational studies of the primary phototransduction event in visual rhodopsin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Vertebrate ultraviolet visual pigments: protonation of the retinylidene Schiff base and a counterion switch during photoactivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Retinal counterion switch in the photoactivation of the G protein-coupled receptor rhodopsin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

The evolution of color vision in insects.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Highly conserved glutamic acid in the extracellular IV-V loop in rhodopsins acts as the counterion in retinochrome, a member of the rhodopsin family.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Molecular evolution of vertebrate visual pigments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Cloning and nucleotide sequence of cDNA for rhodopsin of the squid Todarodes pacificus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Nature of the primary photochemical events in rhodopsin and bacteriorhodopsin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

21 June 2018

Observation of "ionic lock" formation in molecular dynamics simulations of wild-type beta 1 and beta 2 adrenergic receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

30 October 2018

Protein assistance in the photoisomerization of rhodopsin and 9-cis-rhodopsin--insights from experiment and theory.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

30 October 2018

Internal water molecules of the proton-pumping halorhodopsin in the presence of azide.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

30 October 2018

Structural changes in the Schiff base region of squid rhodopsin upon photoisomerization studied by low-temperature FTIR spectroscopy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

30 October 2018

Absorption of schiff-base retinal chromophores in vacuo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

30 October 2018

The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

30 October 2018

Hydration free energies and entropies for water in protein interiors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

30 October 2018

Counterion displacement in the molecular evolution of the rhodopsin family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

30 October 2018

The rhodopsin system of the squid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

30 October 2018

Solution and biologically relevant conformations of enantiomeric 11-cis-locked cyclopropyl retinals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

30 October 2018

Signal transduction: The rhodopsin story continued

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827932

30 October 2018

The Light Shall Show the Way-Or: The Conformational Changes of the Retinal Chromophore in Rhodopsin upon Light Activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/20066712

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional waters in intraprotein proton transfer monitored by FTIR difference spectroscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/20066712

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

S1 and S2 excited States of gas-phase Schiff-base retinal chromophores

1 reference

https://pubmed.ncbi.nlm.nih.gov/20066712

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin of spectral tuning in rhodopsin--it is not the binding pocket

1 reference

https://pubmed.ncbi.nlm.nih.gov/20066712

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nonempirical Calculation of Polymethine Excited States

1 reference

https://pubmed.ncbi.nlm.nih.gov/20066712

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Vision in Octopus and Squid: Rhodopsin and Retinochrome in the Octopus Retina

1 reference

https://pubmed.ncbi.nlm.nih.gov/20066712

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Circular dichroism of squid rhodopsin and its intermediates

1 reference

https://pubmed.ncbi.nlm.nih.gov/20066712

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selective activation of G-protein subtypes by vertebrate and invertebrate rhodopsins

1 reference

https://pubmed.ncbi.nlm.nih.gov/20066712

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/CHEM.200903194

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

ResearchGate publication ID

0 references

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