(Q33736938)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21047091%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

title

Water in the polar and nonpolar cavities of the protein interleukin-1β (English)

1 reference

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15 January 2020

3

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15 January 2020

Gerhard Hummer

4

1 reference

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15 January 2020

author name string

Hao Yin

1

1 reference

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15 January 2020

Guogang Feng

2

1 reference

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15 January 2020

Jayendran C Rasaiah

5

1 reference

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15 January 2020

language of work or name

English

0 references

publication date

3 November 2010

1 reference

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Journal of Physical Chemistry B

15 January 2020

published in

1 reference

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15 January 2020

volume

114

1 reference

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15 January 2020

issue

49

1 reference

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15 January 2020

page(s)

16290-16297

1 reference

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Molecular dynamics free energy calculations to assess the possibility of water existence in protein nonpolar cavities

15 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

A review about nothing: are apolar cavities in proteins really empty?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Water in nonpolar confinement: from nanotubes to proteins and beyond

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Hydration of a hydrophobic cavity and its functional role: a simulation study of human interleukin-1beta.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Structural Rigidity of a Large Cavity-containing Protein Revealed by High-pressure Crystallography

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Determination of solvent content in cavities in IL-1beta using experimentally phased electron density

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

The Amber biomolecular simulation programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Water clusters in nonpolar cavities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

MHC-peptide binding is assisted by bound water molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Water conduction through the hydrophobic channel of a carbon nanotube

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Crystal structure of a naturally occurring parallel right-handed coiled coil tetramer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Water penetration and escape in proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

NMR identification of hydrophobic cavities with low water occupancies in protein structures using small gas molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Identification of a functional water channel in cytochrome P450 enzymes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: a molecular dynamics free energy perturbation study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Water: now you see it, now you don't

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Demonstration of positionally disordered water within a protein hydrophobic cavity by NMR.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Crystallographic refinement of interleukin 1 beta at 2.0 A resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Crystal structure of recombinant human interleukin-1 beta at 2.0 A resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Identification and localization of bound internal water in the solution structure of interleukin 1 beta by heteronuclear three-dimensional 1H rotating-frame Overhauser 15N-1H multiple quantum coherence NMR spectroscopy.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

High-resolution three-dimensional structure of interleukin 1 beta in solution by three- and four-dimensional nuclear magnetic resonance spectroscopy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Functional implications of interleukin-1 beta based on the three-dimensional structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

The Entropic Cost of Bound Water in Crystals and Biomolecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Electric field and temperature effects on water in the narrow nonpolar pores of carbon nanotubes

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Hydration free energies and entropies for water in protein interiors

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

Metastable Water Clusters in the Nonpolar Cavities of the Thermostable Protein Tetrabrachion

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005849

X-ray structural studies of the cytokine interleukin 1-beta

30 October 2018

1 reference

12 December 2020

Hydrophilicity of cavities in proteins

1 reference

12 December 2020

Use of NMR to detect water within nonpolar protein cavities

1 reference

12 December 2020

Combining experimental information from crystal and solution studies: joint X-ray and NMR refinement

1 reference

12 December 2020

Protein hydration dynamics in aqueous solution

1 reference

12 December 2020

Calculation of NMR-relaxation parameters for flexible molecules from molecular dynamics simulations

1 reference

12 December 2020

Identifiers

DOI

10.1021/JP108731R

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21047091%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21047091%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

PubMed publication ID

21047091

1 reference