(Q33742084)

English

The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana.

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scholarly article

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16 January 2020

The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana (English)

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16 January 2020

Arabidopsis thaliana

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DNA methylation

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1

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16 January 2020

Angelique Deleris

2

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16 January 2020

author name string

William Wong

3

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16 January 2020

Xuehua Zhong

4

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16 January 2020

Hang Gyeong Chin

5

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16 January 2020

Gregory A Horwitz

6

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16 January 2020

Krystyna A Kelly

7

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16 January 2020

Sriharsa Pradhan

8

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16 January 2020

Steven E Jacobsen

9

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16 January 2020

publication date

28 October 2010

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16 January 2020

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16 January 2020

6

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16 January 2020

e1001182

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16 January 2020

10

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16 January 2020

copyright license

Creative Commons Attribution 4.0 International

28 October 2010

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April 2022 Public Data File from Crossref

copyright status

0 references

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Small RNA silencing pathways in germ and stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

SRA-domain proteins required for DRM2-mediated de novo DNA methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Origins and evolution of eukaryotic RNA interference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Small RNA guides for de novo DNA methylation in mammalian germ cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Structural basis of ubiquitin recognition by the ubiquitin-associated (UBA) domain of the ubiquitin ligase EDD

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Heritable epigenetic mutation of a transposon-flanked Arabidopsis gene due to lack of the chromatin-remodeling factor DDM1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Allosteric regulation of an essential trypanosome polyamine biosynthetic enzyme by a catalytically dead homolog

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Reconstitution and mechanism of the stimulation of de novo methylation by human DNMT3L

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

EUKARYOTIC CYTOSINE METHYLTRANSFERASES

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

RNA polymerase IV directs silencing of endogenous DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Role of transposable elements in heterochromatin and epigenetic control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Genetic and functional diversification of small RNA pathways in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Mili, a mammalian member of piwi family gene, is essential for spermatogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Regulation of myotubularin-related (MTMR)2 phosphatidylinositol phosphatase by MTMR5, a catalytically inactive phosphatase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Solution structures of UBA domains reveal a conserved hydrophobic surface for protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

Conserved plant genes with similarity to mammalian de novo DNA methyltransferases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

The DNA methylation locus DDM1 is required for maintenance of gene silencing in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

DNA methyltransferases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2965745

21 June 2018

DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Selective epigenetic control of retrotransposition in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Bursts of retrotransposition reproduced in Arabidopsis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

RNA silencing genes control de novo DNA methylation

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Atypical RNA polymerase subunits required for RNA-directed DNA methylation.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Dnmt3L and the establishment of maternal genomic imprints.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Mechanism of stimulation of catalytic activity of Dnmt3A and Dnmt3B DNA-(cytosine-C5)-methyltransferases by Dnmt3L.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

DNA methylation is independent of RNA interference in Neurospora.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1001182

21 January 2018

Stimulation effect of Dnmt3L on the DNA methylation activity of Dnmt3a2

1 reference

https://pubmed.ncbi.nlm.nih.gov/21060858

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PGEN.1001182

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21060858%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21060858%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21060858%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

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