(Q33780396)

29 July 2017

title

Genome-wide regulatory complexity in yeast promoters: separation of functionally conserved and neutral sequence (English)

1 reference

29 July 2017

Chen-Shan Chin

1

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29 July 2017

Jeffrey H Chuang

series ordinal

2

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29 July 2017

Hao Li

series ordinal

3

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29 July 2017

language of work or name

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14 January 2005

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29 July 2017

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29 July 2017

volume

15

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29 July 2017

issue

2

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29 July 2017

page(s)

205-213

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cis-Regulatory and protein evolution in orthologous and duplicate genes

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

4 July 2018

1 reference

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Saccharomyces genome database: underlying principles and organisation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

A global view of the selection forces in the evolution of yeast cis-regulation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

Whole-genome discovery of transcription factor binding sites by network-level conservation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

Translational selection and yeast proteome evolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

4 July 2018

1 reference

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Sequencing and comparison of yeast species to identify genes and regulatory elements

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

On schemes of combinatorial transcription logic

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

Initial sequencing and comparative analysis of the mouse genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

The roles of REV3 and RAD57 in double-strand-break-repair-induced mutagenesis of Saccharomyces cerevisiae

4 July 2018

1 reference

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Functional evolution of noncoding DNA.

4 July 2018

1 reference

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Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae

4 July 2018

1 reference

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Gene ontology: tool for the unification of biology

4 July 2018

1 reference

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KEGG: kyoto encyclopedia of genes and genomes

4 July 2018

1 reference

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Prediction of complete gene structures in human genomic DNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

Ribosomal protein L32 of Saccharomyces cerevisiae influences both the splicing of its own transcript and the processing of rRNA.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

On the Organization of Higher Chromosomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

SCPD: a promoter database of the yeast Saccharomyces cerevisiae.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=546519

30 October 2018

Identifiers

DOI

10.1101/GR.3243305

1 reference

29 July 2017

1 reference

29 July 2017

1 reference