(Q33784385)

29 July 2017

title

Comparative study of generalized Born models: protein dynamics (English)

1 reference

29 July 2017

Hao Fan

1

1 reference

29 July 2017

Alan E Mark

series ordinal

2

1 reference

29 July 2017

Jiang Zhu

series ordinal

3

1 reference

29 July 2017

Barry Honig

series ordinal

4

1 reference

29 July 2017

language of work or name

English

0 references

publication date

6 April 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

1 reference

29 July 2017

volume

102

1 reference

29 July 2017

issue

19

1 reference

29 July 2017

page(s)

6760-6764

1 reference

Molecular dynamics of biological macromolecules: a brief history and perspective

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100760

Effective Born radii in the generalized Born approximation: the importance of being perfect

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100760

Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: applications to the molecular systems and geometric objects

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100760

Evaluation of a fast implicit solvent model for molecular dynamics simulations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100760

Solvent accessible surface area and excluded volume in proteins. Analytical equations for overlapping spheres and implications for the hydrophobic effect.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100760

Dynamics of folded proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100760

AGBNP: an analytic implicit solvent model suitable for molecular dynamics simulations and high-resolution modeling.

4 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408857102

GROMACS: A message-passing parallel molecular dynamics implementation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408857102

Relative stability of protein structures determined by X-ray crystallography or NMR spectroscopy: a molecular dynamics simulation study

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408857102

New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408857102

Parametrized Models of Aqueous Free Energies of Solvation Based on Pairwise Descreening of Solute Atomic Charges from a Dielectric Medium

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408857102

GROMACS 3.0: a package for molecular simulation and trajectory analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408857102

Protein molecular dynamics with the generalized born/ACE solvent model

21 January 2018

2 references

https://api.crossref.org/works/10.1073%2FPNAS.0408857102

21 January 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100760

Comparison of various implicit solvent models in molecular dynamics simulations of immunoglobulin G light chain dimer

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100760

An Efficient Mean Solvation Force Model for Use in Molecular Dynamics Simulations of Proteins in Aqueous Solution

30 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408857102

Corrigenda: Molecular dynamics simulations of biomolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408857102

Continuum solvent molecular dynamics study of flexibility in interleukin-8

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15814616

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Theory and applications of the generalized Born solvation model in macromolecular simulations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15814616

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comparative study of generalized born models: Born radii and peptide folding

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15814616

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0408857102

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference