(Q33800083)

29 July 2017

title

Modulating native-like residual structure in the fully denatured state of photoactive yellow protein affects its refolding (English)

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29 July 2017

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Byoung-Chul Lee

1

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29 July 2017

Masato Kumauchi

series ordinal

2

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29 July 2017

Wouter D Hoff

series ordinal

3

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29 July 2017

language of work or name

English

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publication date

23 February 2010

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29 July 2017

number of pages

8

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Journal of Biological Chemistry

inferred from page(s)

published in

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29 July 2017

volume

285

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29 July 2017

issue

17

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29 July 2017

page(s)

12579-12586

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Electrostatic effects on funneled landscapes and structural diversity in denatured protein ensembles

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

A pre-existing hydrophobic collapse in the unfolded state of an ultrafast folding protein

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Single-molecule detection of structural changes during Per-Arnt-Sim (PAS) domain activation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Is there or isn't there? The case for (and against) residual structure in chemically denatured proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Reassessing random-coil statistics in unfolded proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

NMR and SAXS characterization of the denatured state of the chemotactic protein CheY: implications for protein folding initiation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Probing the nature of the blue-shifted intermediate of photoactive yellow protein in solution by NMR: hydrogen-deuterium exchange data and pH studies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Evidence for trans-cis isomerization of the p-coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

The denatured state (the other half of the folding equation) and its role in protein stability.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Characterization of the stable, acid-induced, molten globule-like state of staphylococcal nuclease

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Cold denaturation of proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Thermodynamics of structural stability and cooperative folding behavior in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857096

Role of residual structure in the unfolded state of a thermophilic protein.

28 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.065821

Long-range interactions within a nonnative protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.065821

Persistence of native-like topology in a denatured protein in 8 M urea

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.065821

Folding and signaling share the same pathway in a photoreceptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.065821

Light induces destabilization of photoactive yellow protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.065821

The solution structure of a transient photoreceptor intermediate: Delta25 photoactive yellow protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.065821

Global conformational changes upon receptor stimulation in photoactive yellow protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.065821

Principles of protein folding--a perspective from simple exact models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.065821

NMR determination of residual structure in a urea-denatured protein, the 434-repressor

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.065821

The Key to Solving the Protein-Folding Problem Lies in an Accurate Description of the Denatured State Financial support from the Schweizerischer Nationalfonds (Project no. 21-50929.97) is gratefully acknowledged

21 January 2018

1 reference

12 December 2020

Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry

1 reference

12 December 2020

The observed change in heat capacity accompanying the thermal unfolding of proteins depends on the composition of the solution and on the method employed to change the temperature of unfolding

1 reference

12 December 2020

Time-resolved thermodynamics: heat capacity change of transient species during photoreaction of PYP

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M109.065821

1 reference

29 July 2017

1 reference

29 July 2017

1 reference