(Q33803939)

English

Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes (English)

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

author name string

Y Yamaguchi-Kabata

1

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

T Gojobori

2

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

publication date

1 May 2000

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Journal of Virology

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

74

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

4335-4350

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Among-site rate variation and its impact on phylogenetic analyses

1 reference

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A group of V3 sequences from human immunodeficiency virus type 1 subtype E non-syncytium-inducing, CCR5-using variants are resistant to positive selection pressure

1 reference

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Positive selection on the H3 hemagglutinin gene of human influenza virus A.

1 reference

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Parallel evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection

1 reference

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4 July 2018

Host-specific modulation of the selective constraints driving human immunodeficiency virus type 1 env gene evolution

1 reference

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4 July 2018

Evolution and biological characterization of human immunodeficiency virus type 1 subtype E gp120 V3 sequences following horizontal and vertical virus transmission in a single family.

1 reference

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4 July 2018

The antigenic structure of the HIV gp120 envelope glycoprotein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=111951

4 July 2018

Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody

1 reference

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4 July 2018

A conserved HIV gp120 glycoprotein structure involved in chemokine receptor binding

1 reference

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The HIV-1 Envelope Glycoproteins: Fusogens, Antigens, and Immunogens

1 reference

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4 July 2018

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

1 reference

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Long term trends in the evolution of H(3) HA1 human influenza type A

1 reference

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In vivo sequence variability of human immunodeficiency virus type 1 envelope gp120: association of V2 extension with slow disease progression

1 reference

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Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts

1 reference

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The V3 domain of the HIV-1 gp120 envelope glycoprotein is critical for chemokine-mediated blockade of infection

1 reference

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HIV-1 entry into CD4+ cells is mediated by the chemokine receptor CC-CKR-5

1 reference

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4 July 2018

Identification of a major co-receptor for primary isolates of HIV-1

1 reference

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HIV-1 Entry Cofactor: Functional cDNA Cloning of a Seven-Transmembrane, G Protein-Coupled Receptor

1 reference

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Human immunodeficiency virus type 1 tropism for T-lymphoid cell lines: role of the V3 loop and C4 envelope determinants

1 reference

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4 July 2018

Human monoclonal antibody 2G12 defines a distinctive neutralization epitope on the gp120 glycoprotein of human immunodeficiency virus type 1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=111951

4 July 2018

Functional and immunologic characterization of human immunodeficiency virus type 1 envelope glycoproteins containing deletions of the major variable regions

1 reference

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Statistical analysis of nucleotide sequences of the hemagglutinin gene of human influenza A viruses

1 reference

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Evolution of pathogenic viruses with special reference to the rates of synonymous and nonsynonymous substitutions

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

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A naturally occurring single basic amino acid substitution in the V3 region of the human immunodeficiency virus type 1 env protein alters the cellular host range and antigenic structure of the virus

1 reference

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Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

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4 July 2018

New methods for estimating the numbers of synonymous and nonsynonymous substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=111951

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Characterization of conserved human immunodeficiency virus type 1 gp120 neutralization epitopes exposed upon gp120-CD4 binding

1 reference

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RASMOL: biomolecular graphics for all

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Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application

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The CD4 (T4) antigen is an essential component of the receptor for the AIDS retrovirus

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Non-Darwinian Evolution

1 reference

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Evolutionary Rate at the Molecular Level

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A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes

1 reference

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1 reference

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Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

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Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

1 reference

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Evolution of the structural proteins of human immunodeficiency virus: selective constraints on nucleotide substitution

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Mutation pattern of human immunodeficiency virus gene

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Natural selection on the gag, pol, and env genes of human immunodeficiency virus 1 (HIV-1).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=111951

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Models of natural mutations including site heterogeneity

1 reference

https://pubmed.ncbi.nlm.nih.gov/10756049

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relationship between mutability, polarity and exteriority of amino acid residues in protein evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/10756049

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A method for detecting positive selection at single amino acid sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/10756049

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of Antigen Drift/Switching: Continuously Evading Pathogens

1 reference

https://pubmed.ncbi.nlm.nih.gov/10756049

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JVI.74.9.4335-4350.2000

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

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