(Q33812542)

29 July 2017

2 references

19 September 2019

10 November 2020

A short survey of computational analysis methods in analysing ChIP-seq data (English)

1 reference

biomedical investigative technique

29 July 2017

main subject

1 reference

19 September 2019

1 reference

10 November 2020

Hyunmin Kim

1

1 reference

29 July 2017

Jihye Kim

2

1 reference

29 July 2017

Heather Selby

3

1 reference

29 July 2017

Dexiang Gao

4

1 reference

29 July 2017

Tiejun Tong

5

1 reference

29 July 2017

Tzu Lip Phang

6

1 reference

29 July 2017

Aik Choon Tan

7

1 reference

29 July 2017

publication date

1 January 2011

3 references

29 July 2017

19 September 2019

10 November 2020

3 references

29 July 2017

19 September 2019

10 November 2020

5

1 reference

29 July 2017

issue

2

1 reference

29 July 2017

page(s)

117-123

1 reference

A signal-noise model for significance analysis of ChIP-seq with negative control

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

Computation for ChIP-seq and RNA-seq studies

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

Inherent signals in sequencing-based Chromatin-ImmunoPrecipitation control libraries

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

RNA Pol II accumulates at promoters of growth genes during developmental arrest.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

Design and analysis of ChIP-seq experiments for DNA-binding proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

An integrated software system for analyzing ChIP-chip and ChIP-seq data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

Model-based analysis of ChIP-Seq (MACS)

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

F-Seq: a feature density estimator for high-throughput sequence tags

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

Genome-wide mapping of in vivo protein-DNA interactions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525234

Evidence for nucleosome depletion at active regulatory regions genome-wide

4 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1479-7364-5-2-117

10.1186/1479-7364-5-2-117

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference