(Q33821631)

29 July 2017

Predicted highly expressed genes in archaeal genomes (English)

1 reference

29 July 2017

Samuel Karlin

1

1 reference

29 July 2017

Jan Mrázek

series ordinal

2

1 reference

29 July 2017

Jiong Ma

series ordinal

3

1 reference

29 July 2017

Luciano Brocchieri

series ordinal

4

1 reference

29 July 2017

language of work or name

English

0 references

publication date

9 May 2005

1 reference

29 July 2017

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

1 reference

29 July 2017

102

1 reference

29 July 2017

20

1 reference

29 July 2017

7303-7308

1 reference

Genomic and proteomic comparisons between bacterial and archaeal genomes and related comparisons with the yeast and fly genomes

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Mechanism of the eukaryotic chaperonin: protein folding in the chamber of secrets.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Evolution of assisted protein folding: the distribution of the main chaperoning systems within the phylogenetic domain archaea

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Intracellular localization of a group II chaperonin indicates a membrane-related function

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Pathogenic archaea: do they exist?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Archeal DNA replication: eukaryal proteins in a bacterial context

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Comparative genomics of Archaea: how much have we learned in six years, and what's next?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

The balance of driving forces during genome evolution in prokaryotes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Predicting gene expression levels from codon biases in alpha-proteobacterial genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

The chaperonins: perspectives from the Archaea

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Prokaryotic evolution in light of gene transfer

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

4 July 2018

Evolution of the Archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Ancient phylogenetic relationships

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Molecular chaperones in the cytosol: from nascent chain to folded protein

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

The origin of the eukaryotic cell: a genomic investigation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

High resolution structure of the large ribosomal subunit from a mesophilic eubacterium

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Paleobiology of the archean

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Protein folding and molecular chaperones in archaea

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

DNA recombination and repair in the archaea

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Characterizations of highly expressed genes of four fast-growing bacteria

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Phylogenetic inferences from molecular sequences: review and critique

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

The habitat and nature of early life

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Structure of the molecular chaperone prefoldin: unique interaction of multiple coiled coil tentacles with unfolded proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Predicted highly expressed genes of diverse prokaryotic genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Lateral gene transfer and the nature of bacterial innovation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Lateral gene transfer in prokaryotes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Early evolution: prokaryotes, the new kids on the block

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

A chimeric prokaryotic ancestry of mitochondria and primitive eukaryotes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Metabolic symbiosis at the origin of eukaryotes.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Discontinuous occurrence of the hsp70 (dnaK) gene among Archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Genomic evidence for two functionally distinct gene classes.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Protein folding in the cytosol: chaperonin-dependent and -independent mechanisms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

The hydrogen hypothesis for the first eukaryote

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

A molecular view of microbial diversity and the biosphere

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Ribosome-mediated translational pause and protein domain organization

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Clusters of charged residues in protein three-dimensional structures

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Posttranscriptional regulatory mechanisms in Escherichia coli

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

The phylogenetic relations of DNA-dependent RNA polymerases of archaebacteria, eukaryotes, and eubacteria

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Acquired thermotolerance and heat shock in the extremely thermophilic archaebacterium Sulfolobus sp. strain B12.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

A molecular chaperone from a thermophilic archaebacterium is related to the eukaryotic protein t-complex polypeptide-1.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129124

Life's third domain (Archaea): an established fact or an endangered paradigm?

4 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

Codon usages in different gene classes of the Escherichia coli genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

Complex evolution of photosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

Aerobic respiration in the Archaean?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

Trigger factor and DnaK cooperate in folding of newly synthesized proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

Conservation among HSP60 sequences in relation to structure, function, and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

Structural basis of pilus subunit recognition by the PapD chaperone.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

L23 protein functions as a chaperone docking site on the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

Pathogenic archaebacteria: do they not exist because archaebacteria use different vitamins?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

Response to William Martin's letter

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

A non-hyperthermophilic ancestor for Bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

Identification of in vivo substrates of the chaperonin GroEL

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502313102

Computer analyses of complete genomes suggest that some archaebacteria employ both eukaryotic and eubacterial mechanisms in translation initiation

21 January 2018

1 reference

12 December 2020

Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes

1 reference

12 December 2020

Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli

1 reference

12 December 2020

The origin of the eukaryotic cell

1 reference

12 December 2020

Polypeptide flux through bacterial Hsp70: DnaK cooperates with trigger factor in chaperoning nascent chains

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0502313102

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference