(Q33836147)

29 July 2017

title

Computational Cellular Dynamics Based on the Chemical Master Equation: A Challenge for Understanding Complexity (English)

1 reference

29 July 2017

Jie Liang

1

1 reference

29 July 2017

Hong Qian

series ordinal

2

1 reference

29 July 2017

publication date

1 January 2010

1 reference

Journal of Computer Science and Technology

29 July 2017

published in

1 reference

29 July 2017

volume

25

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29 July 2017

issue

1

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29 July 2017

page(s)

154-168

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Stochastic bistability and bifurcation in a mesoscopic signaling system with autocatalytic kinase

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Perturbation-based Markovian transmission model for probing allosteric dynamics of large macromolecular assembling: a study of GroEL-GroES

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Stochastic dynamics and non-equilibrium thermodynamics of a bistable chemical system: the Schlögl model revisited

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Potential landscape and flux framework of nonequilibrium networks: robustness, dissipation, and coherence of biochemical oscillations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Theoretical analysis of epigenetic cell memory by nucleosome modification.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

On the use of the word 'epigenetic'.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Potential energy landscape and robustness of a gene regulatory network: toggle switch

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Classical versus stochastic kinetics modeling of biochemical reaction systems

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Bacterial persistence: a model of survival in changing environments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Importance of chirality and reduced flexibility of protein side chains: a study with square and tetrahedral lattice models

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Stability and the evolvability of function in a model protein

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Fast evaluation of fluctuations in biochemical networks with the linear noise approximation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Concentration fluctuations in a mesoscopic oscillating chemical reaction system

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

The role of DNA methylation in mammalian epigenetics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Evolution of functionality in lattice proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Histone acetylation and an epigenetic code

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Construction of a genetic toggle switch in Escherichia coli

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Stochastic versions of the Hodgkin-Huxley equations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

4 July 2018

How does a protein fold?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Principles of protein folding--a perspective from simple exact models.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Lattice model for rapidly folding protein-like heteropolymers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Simple chemical reaction systems with limit cycle behaviour

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

4 July 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11390-010-9312-6

Stochastic bifurcation, slow fluctuations, and bistability as an origin of biochemical complexity.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Stochastic probability landscape model for switching efficiency, robustness, and differential threshold for induction of genetic circuit in phage lambda

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Stochastic chemical kinetics and the total quasi-steady-state assumption: application to the stochastic simulation algorithm and chemical master equation.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Understanding stochastic simulations of the smallest genetic networks

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

A quasistationary analysis of a stochastic chemical reaction: Keizer's paradox

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Mass fluctuation kinetics: capturing stochastic effects in systems of chemical reactions through coupled mean-variance computations.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Open-system nonequilibrium steady state: statistical thermodynamics, fluctuations, and chemical oscillations.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Protein folding dynamics via quantification of kinematic energy landscape.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

The finite state projection algorithm for the solution of the chemical master equation

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

The slow-scale stochastic simulation algorithm.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Robustness, stability and efficiency of phage lambda genetic switch: dynamical structure analysis.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Comparison of algorithms for the simulation of action potentials with stochastic sodium channels.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Transition states and the meaning of Phi-values in protein folding kinetics

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Predicting temporal fluctuations in an intracellular signalling pathway

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079062

Stability puzzles in phage lambda

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24999297

12 December 2020

inferred from PubMed ID database lookup

Criterion that determines the foldability of proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24999297

12 December 2020

inferred from PubMed ID database lookup

A model study of protein nascent chain and cotranslational folding using hydrophobic-polar residues

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24999297

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1007/S11390-010-9312-6

1 reference

29 July 2017

DBLP publication ID

journals/jcst/LiangQ09

1 reference

DBLP Dataset 2021-01-02

release_vsrnxgosr5gk7fuvchbu4qxiiy

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/vsrnxgosr5gk7fuvchbu4qxiiy

24 November 2022

mapped directly with Wikidata item

PMC publication ID

4079062

1 reference

29 July 2017

1 reference