(Q33840146)

29 July 2017

title

Reduced stability of mRNA secondary structure near the translation-initiation site in dsDNA viruses (English)

1 reference

29 July 2017

2

1 reference

29 July 2017

1

1 reference

8 January 2019

language of work or name

1 reference

7 March 2011

1 reference

29 July 2017

published in

BMC Evolutionary Biology

1 reference

29 July 2017

volume

11

1 reference

29 July 2017

page(s)

59

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-11-59

29 July 2017

exact match

0 references

cites work

A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Translation efficiency is determined by both codon bias and folding energy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Coding-sequence determinants of gene expression in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Genome landscapes and bacteriophage codon usage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Translation initiation region sequence preferences in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Selection for efficient translation initiation biases codon usage at second amino acid position in secretory proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

The ancient Virus World and evolution of cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

The origin of viruses and their possible roles in major evolutionary transitions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Memory efficient folding algorithms for circular RNA secondary structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Regulation of translation via mRNA structure in prokaryotes and eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

AU-rich sequences within 5' untranslated leaders enhance translation and stabilize mRNA in Escherichia coli.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

A codon window in mRNA downstream of the initiation codon where NGG codons give strongly reduced gene expression in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Widespread selection for local RNA secondary structure in coding regions of bacterial genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Do viruses form lineages across different domains of life?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Origins of highly mosaic mycobacteriophage genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Common origin of four diverse families of large eukaryotic DNA viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

The influence of adenine-rich motifs in the 3' portion of the ribosome binding site on human IFN-gamma gene expression in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

Determinant of cistron specificity in bacterial ribosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072339

The use of global transcriptional analysis to reveal the biological and cellular events involved in distinct development phases of Trichophyton rubrum conidial germination

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-59

Enhancement of translation initiation by A/T-rich sequences downstream of the initiation codon in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-59

Effects of codon usage versus putative 5'-mRNA structure on the expression of Fusarium solani cutinase in the Escherichia coli cytoplasm

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-59

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-59

Phylogenies and the Comparative Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-59

Conservation of Translation Initiation Sites Based on Dinucleotide Frequency and Codon Usage in Escherichia coli K-12 (W3110): Non-random Distribution of A/T-rich Sequences Immediately Upstream of the Translation Initiation Codon

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-59

21 January 2018

Identifiers

DOI

10.1186/1471-2148-11-59

1 reference

Dimensions Publication ID

29 July 2017

1014645191

0 references

Fatcat ID

release_eu53spv3jbashlrnkhgr3tjds4

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/eu53spv3jbashlrnkhgr3tjds4

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3072339

1 reference

29 July 2017

1 reference