(Q33845469)

29 July 2017

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title

Evolution of genes and taxa: a primer (English)

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29 July 2017

Doyle JJ

1

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29 July 2017

Gaut BS

series ordinal

2

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29 July 2017

publication date

1 January 2000

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29 July 2017

number of pages

23

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inferred from page(s)

published in

Plant Molecular Biology

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29 July 2017

volume

42

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29 July 2017

issue

1

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29 July 2017

page(s)

1-23

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teosinte branched1 and the origin of maize: evidence for epistasis and the evolution of dominance

29 July 2017

cites work

1 reference

12 December 2020

Distinguishing Homologous from Analogous Proteins

1 reference

12 December 2020

Molecular evolution of the small subunit of ribulose bisphosphate carboxylase: nucleotide substitution and gene conversion

1 reference

12 December 2020

Statistical tests of neutrality of mutations

1 reference

12 December 2020

Tempo and mode of mitochondrial DNA evolution in vertebrates at the amino acid sequence level: rapid evolution in warm-blooded vertebrates

1 reference

12 December 2020

On the constancy of the evolutionary rate of cistrons

1 reference

12 December 2020

Phylogeny and substitution rates of angiosperm actin genes

1 reference

12 December 2020

Bias-corrected paralinear and LogDet distances and tests of molecular clocks and phylogenies under nonstationary nucleotide frequencies

1 reference

12 December 2020

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

12 December 2020

Restriction fragment length polymorphism and divergence in the genomic regions of high and low recombination in self-fertilizing and cross-fertilizing aegilops species

1 reference

12 December 2020

Excess nonsynonymous substitution of shared polymorphic sites among self-incompatibility alleles of Solanaceae

1 reference

12 December 2020

Intragenic recombination in the Adh locus of the wild plant Arabidopsis thaliana.

1 reference

12 December 2020

Inferring the evolutionary histories of the Adh and Adh-dup loci in Drosophila melanogaster from patterns of polymorphism and divergence

1 reference

12 December 2020

THE LIMITS OF AMINO ACID SEQUENCE DATA IN ANGIOSPERM PHYLOGENETIC RECONSTRUCTION.

1 reference

12 December 2020

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

1 reference

12 December 2020

A codon-based model of nucleotide substitution for protein-coding DNA sequences

1 reference

12 December 2020

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

1 reference

12 December 2020

Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: II. Four taxa without a molecular clock

1 reference

12 December 2020

Extensive variation in evolutionary rate of rbcL gene sequences among seed plants

1 reference

12 December 2020

Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

1 reference

12 December 2020

The paleontology of intergene retrotransposons of maize

1 reference

12 December 2020

The posterior probability distribution of alignments and its application to parameter estimation of evolutionary trees and to optimization of multiple alignments.

1 reference

12 December 2020

An evaluation of the molecular clock hypothesis using mammalian DNA sequences

1 reference

12 December 2020

GeneTree: comparing gene and species phylogenies using reconciled trees.

1 reference

12 December 2020

PRIMARY STRUCTURE AND EVOLUTION OF CYTOCHROME C

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12 December 2020

On Some Principles Governing Molecular Evolution

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12 December 2020

Nucleotide sequence diversity at the alcohol dehydrogenase 1 locus in wild barley (Hordeum vulgare ssp. spontaneum): an evaluation of the background selection hypothesis

1 reference

12 December 2020

Episodic adaptive evolution of primate lysozymes

1 reference

12 December 2020

Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae).

1 reference

12 December 2020

Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data

1 reference

12 December 2020

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

1 reference

12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

12 December 2020

Phylogenetic test of the molecular clock and linearized trees

1 reference

12 December 2020

Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution

1 reference

12 December 2020

Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.).

1 reference

12 December 2020

Molecular population genetics of floral homeotic loci. Departures from the equilibrium-neutral model at the APETALA3 and PISTILLATA genes of Arabidopsis thaliana

1 reference

12 December 2020

Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: nonneutral evolution and naturally occurring variation in floral homeotic function

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12 December 2020

Large-scale search for genes on which positive selection may operate

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12 December 2020

Restriction-map variation in the alcohol dehydrogenase region of Drosophila pseudoobscura.

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12 December 2020

Phylogenetic methods come of age: testing hypotheses in an evolutionary context

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12 December 2020

Evidence for higher rates of nucleotide substitution in rodents than in man

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12 December 2020

Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway

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12 December 2020

Distinguishing migration from isolation using the variance of pairwise differences

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12 December 2020

Confidence in evolutionary trees from biological sequence data.

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12 December 2020

Success of maximum likelihood phylogeny inference in the four-taxon case

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12 December 2020

Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection

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12 December 2020

USING HITCHHIKING GENES TO STUDY ADAPTATION AND DIVERGENCE DURING SPECIATION WITHIN THE DROSOPHILA MELANOGASTER SPECIES COMPLEX.

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12 December 2020

The effect of change in population size on DNA polymorphism

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12 December 2020

Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato.

1 reference

12 December 2020

Genetic and morphological analysis of a maize-teosinte F2 population: implications for the origin of maize

1 reference

12 December 2020

A tree reconstruction method that is economical in the number of pairwise comparisons used

1 reference

12 December 2020

Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock

1 reference

12 December 2020

Speciation and domestication in maize and its wild relatives: evidence from the globulin-1 gene

1 reference

12 December 2020

Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation

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12 December 2020

DNA polymorphism in lycopersicon and crossing-over per physical length

1 reference

12 December 2020

The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group

1 reference

12 December 2020

Estimation of evolutionary distances between nucleotide sequences.

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12 December 2020

1 reference

12 December 2020

Non-Darwinian Evolution

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12 December 2020

Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes

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12 December 2020

Genetic diversity in Leavenworthia populations with different inbreeding levels

1 reference

12 December 2020

Do Plants Have a One-Way Ticket to Genomic Obesity?

1 reference

12 December 2020

Sequence alignment and penalty choice. Review of concepts, case studies and implications

1 reference

12 December 2020

Testing for equality of evolutionary rates

1 reference

12 December 2020

The pattern of neutral molecular variation under the background selection model

1 reference

12 December 2020

Simple methods for testing the molecular evolutionary clock hypothesis.

1 reference

12 December 2020

Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes

1 reference

12 December 2020

Polymorphism at the self-incompatibility locus in Solanaceae predates speciation

1 reference

12 December 2020

DNA class organization on maize Adh1 yeast artificial chromosomes

1 reference

12 December 2020

From teosinte to maize: the catastrophic sexual transmutation

1 reference

12 December 2020

Body size, metabolic rate, generation time, and the molecular clock

1 reference

12 December 2020

Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci

1 reference

12 December 2020

Inching toward reality: an improved likelihood model of sequence evolution

1 reference

12 December 2020

Allelic diversity and gene genealogy at the self-incompatibility locus in the Solanaceae

1 reference

12 December 2020

The limits of selection during maize domestication.

1 reference

12 December 2020

Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis

1 reference

12 December 2020

Comparing patterns of nucleotide substitution rates among chloroplast loci using the relative ratio test

1 reference

12 December 2020

Interior-branch and bootstrap tests of phylogenetic trees.

1 reference

12 December 2020

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

1 reference

12 December 2020

Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants

1 reference

12 December 2020

"Homology" in proteins and nucleic acids: a terminology muddle and a way out of it.

1 reference

12 December 2020

Rates of mitochondrial DNA evolution in sharks are slow compared with mammals

1 reference

12 December 2020

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1 reference

12 December 2020

Detecting selective sweeps in naturally occurring Escherichia coli

1 reference

12 December 2020

Investigation of the bottleneck leading to the domestication of maize

1 reference

12 December 2020

Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data

1 reference

12 December 2020

Nested retrotransposons in the intergenic regions of the maize genome

1 reference

12 December 2020

The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms

1 reference

12 December 2020

Evolutionary Rate at the Molecular Level

1 reference

12 December 2020

Estimating the rate of evolution of the rate of molecular evolution

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12 December 2020

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

1 reference

12 December 2020

The evolution of apical dominance in maize

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12 December 2020

The molecular evolution of development

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12 December 2020

The molecular evolution of the small heat-shock proteins in plants

1 reference

12 December 2020

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

12 December 2020

Trees within trees: genes and species, molecules and morphology

1 reference

12 December 2020

Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution

1 reference

12 December 2020

Theoretical foundation of the minimum-evolution method of phylogenetic inference.

1 reference

12 December 2020

Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs

1 reference

12 December 2020

The evolution of plant nuclear genes

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12 December 2020

Classification and phylogeny of the MADS-box multigene family suggest defined roles of MADS-box gene subfamilies in the morphological evolution of eukaryotes

1 reference

12 December 2020

BEST-FIT MAXIMUM-LIKELIHOOD MODELS FOR PHYLOGENETIC INFERENCE: EMPIRICAL TESTS WITH KNOWN PHYLOGENIES.

1 reference

12 December 2020

A test of neutral molecular evolution based on nucleotide data

1 reference

12 December 2020

Four-cluster analysis: a simple method to test phylogenetic hypotheses

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12 December 2020

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

1 reference

12 December 2020

Immunological Time Scale for Hominid Evolution

1 reference

12 December 2020

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

1 reference

12 December 2020

Identifiers

DOI

10.1023/A:1006349518932

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Dimensions Publication ID

29 July 2017

1010441440

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