(Q33871718)

29 July 2017

A computational framework for gene regulatory network inference that combines multiple methods and datasets (English)

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29 July 2017

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Rita Gupta

1

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29 July 2017

Anna Stincone

2

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29 July 2017

Philipp Antczak

3

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29 July 2017

Sarah Durant

4

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29 July 2017

Roy Bicknell

5

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29 July 2017

Andreas Bikfalvi

6

1 reference

29 July 2017

Francesco Falciani

7

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29 July 2017

13 April 2011

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29 July 2017

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29 July 2017

5

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29 July 2017

52

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https://scigraph.springernature.com/pub.10.1186/1752-0509-5-52

29 July 2017

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cites work

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Revealing strengths and weaknesses of methods for gene network inference

28 July 2018

1 reference

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Towards a rigorous assessment of systems biology models: the DREAM3 challenges

28 July 2018

1 reference

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Improved reconstruction of in silico gene regulatory networks by integrating knockout and perturbation data

28 July 2018

1 reference

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Nrf2: friend or foe for chemoprevention?

28 July 2018

1 reference

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Inferring Drosophila gap gene regulatory network: a parameter sensitivity and perturbation analysis

28 July 2018

1 reference

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Gene regulatory network inference: data integration in dynamic models-a review

28 July 2018

1 reference

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Dialogue on reverse-engineering assessment and methods: the DREAM of high-throughput pathway inference

28 July 2018

1 reference

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How to infer gene networks from expression profiles

28 July 2018

1 reference

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Cell survival responses to environmental stresses via the Keap1-Nrf2-ARE pathway

28 July 2018

1 reference

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Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

28 July 2018

1 reference

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Inference of gene regulatory networks and compound mode of action from time course gene expression profiles

28 July 2018

1 reference

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Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098160

Elucidation of gene interaction networks through time-lagged correlation analysis of transcriptional data

28 July 2018

1 reference

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Advances to Bayesian network inference for generating causal networks from observational biological data

28 July 2018

1 reference

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Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW (YhiW)

28 July 2018

1 reference

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Significance analysis of microarrays applied to the ionizing radiation response

28 July 2018

1 reference

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The pleiotropic two-component regulatory system PhoP-PhoQ

28 July 2018

1 reference

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Regulation of crp transcription by oscillation between distinct nucleoprotein complexes

28 July 2018

1 reference

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Nitrate regulation of anaerobic respiratory gene expression in Escherichia coli

28 July 2018

1 reference

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E. coli RNA polymerase, deleted in the C-terminal part of its alpha-subunit, interacts differently with the cAMP-CRP complex at the lacP1 and at the galP1 promoter

28 July 2018

1 reference

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Modulation of acid-induced amino acid decarboxylase gene expression by hns in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098160

Multiplexed biochemical assays with biological chips

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098160

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098160

Reverse engineering of regulatory networks in human B cells

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-52

Modeling T-cell activation using gene expression profiling and state-space models

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-52

Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-52

Generating realistic in silico gene networks for performance assessment of reverse engineering methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-52

Accessing key steps of human tumor progression in vivo by using an avian embryo model

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-52

Escherichia coli acid resistance: tales of an amateur acidophile

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-52

B1500, a small membrane protein, connects the two-component systems EvgS/EvgA and PhoQ/PhoP in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-52

Inference of biochemical network models in S-system using multiobjective optimization approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-52

Review of molecular mechanisms involved in the activation of the Nrf2-ARE signaling pathway by chemopreventive agents.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098160

29 October 2018

Identifiers

DOI

10.1186/1752-0509-5-52

1 reference

journals/bmcsb/GuptaSADBBF11

29 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

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1 reference

29 July 2017

1 reference