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Structure and dynamics of the HIV-1 frameshift element RNA
scientific article
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scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
title
Structure and dynamics of the HIV-1 frameshift element RNA
(English)
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
author
Pablo García-Miranda
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
Kathryn D Mouzakis
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
author name string
Justin T Low
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
Samuel E Butcher
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
Kevin M Weeks
series ordinal
6
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
Robert J Gorelick
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
language of work or name
English
0 references
publication date
27 June 2014
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
published in
Biochemistry
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
volume
53
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
issue
26
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
page(s)
4282-4291
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
cites work
RNA secondary structure modeling at consistent high accuracy using differential SHAPE.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Highly conserved RNA pseudoknots at the Gag-Pol junction of HIV-1 suggest a novel mechanism of -1 ribosomal frameshifting
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
The cellular environment stabilizes adenine riboswitch RNA structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
HIV-1 frameshift efficiency is primarily determined by the stability of base pairs positioned at the mRNA entrance channel of the ribosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Fingerprinting noncanonical and tertiary RNA structures by differential SHAPE reactivity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Targeting frameshifting in the human immunodeficiency virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
An equilibrium-dependent retroviral mRNA switch regulates translational recoding
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Structure of the HIV-1 Frameshift Site RNA Bound to a Small Molecule Inhibitor of Viral Replication
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Definition of a high-affinity Gag recognition structure mediating packaging of a retroviral RNA genome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
High-throughput SHAPE and hydroxyl radical analysis of RNA structure and ribonucleoprotein assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Architecture and secondary structure of an entire HIV-1 RNA genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Ribosomal frameshifting: an emerging drug target for HIV.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Accurate SHAPE-directed RNA structure determination
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
The presence of the TAR RNA structure alters the programmed -1 ribosomal frameshift efficiency of the human immunodeficiency virus type 1 (HIV-1) by modifying the rate of translation initiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Perspectives on chemistry and therapeutic applications of Locked Nucleic Acid (LNA).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Programmed ribosomal frameshifting in HIV-1 and the SARS-CoV.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Locked nucleic acid: a potent nucleic acid analog in therapeutics and biotechnology.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
The human immunodeficiency virus type 1 ribosomal frameshifting site is an invariant sequence determinant and an important target for antiviral therapy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Efficiency of a programmed -1 ribosomal frameshift in the different subtypes of the human immunodeficiency virus type 1 group M.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Characterization of the frameshift stimulatory signal controlling a programmed -1 ribosomal frameshift in the human immunodeficiency virus type 1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Envelope glycoprotein incorporation, not shedding of surface envelope glycoprotein (gp120/SU), Is the primary determinant of SU content of purified human immunodeficiency virus type 1 and simian immunodeficiency virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
The frameshift signal of HIV-1 involves a potential intramolecular triplex RNA structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Ability of the V3 loop of simian immunodeficiency virus to serve as a target for antibody-mediated neutralization: correlation of neutralization sensitivity, growth in macrophages, and decreased dependence on CD4
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Maintenance of the Gag/Gag-Pol ratio is important for human immunodeficiency virus type 1 RNA dimerization and viral infectivity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Novel Gag-Pol frameshift site in human immunodeficiency virus type 1 variants resistant to protease inhibitors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Thermodynamic effects of formamide on DNA stability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Second locus involved in human immunodeficiency virus type 1 resistance to protease inhibitors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Analysis and localization of cyclophilin A found in the virions of human immunodeficiency virus type 1 MN strain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Productive, persistent infection of human colorectal cell lines with human immunodeficiency virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Characterization of ribosomal frameshifting in HIV-1 gag-pol expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
RNA pseudoknots downstream of the frameshift sites of retroviruses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
5 July 2018
Structure-function analysis of the ribosomal frameshifting signal of two human immunodeficiency virus type 1 isolates with increased resistance to viral protease inhibitors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4089884
retrieved
29 October 2018
Structure of the autoregulatory pseudoknot within the gene 32 messenger RNA of bacteriophages T2 and T6: a model for a possible family of structurally related RNA pseudoknots
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24926888
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Structure of the RNA signal essential for translational frameshifting in HIV-1
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24926888
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Solution structure and thermodynamic investigation of the HIV-1 frameshift inducing element
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24926888
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1021/BI5004926
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
PMCID
4089884
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
PubMed ID
24926888
1 reference
stated in
Europe PubMed Central
PMCID
4089884
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24926888%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 March 2020
ResearchGate publication ID
263100531
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