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A multiplex RNA-seq strategy to profile poly(A+) RNA: application to analysis of transcription response and 3' end formation.
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Europe PubMed Central
PMC publication ID
3160523
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
title
A multiplex RNA-seq strategy to profile poly(A+) RNA: application to analysis of transcription response and 3' end formation
(English)
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Europe PubMed Central
PMC publication ID
3160523
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
main subject
RNA sequencing
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RNA analysis
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RNA-Seq
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author
Jeremy Davis-Turak
series ordinal
2
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Europe PubMed Central
PMC publication ID
3160523
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
Yu Zhou
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3
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Europe PubMed Central
PMC publication ID
3160523
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
author name string
Kristi Fox-Walsh
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1
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Europe PubMed Central
PMC publication ID
3160523
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
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29 January 2020
Hairi Li
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4
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PMC publication ID
3160523
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
Xiang-Dong Fu
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5
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Europe PubMed Central
PMC publication ID
3160523
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
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29 January 2020
publication date
15 April 2011
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3160523
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
published in
Genomics
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PMC publication ID
3160523
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
volume
98
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3160523
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
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29 January 2020
issue
4
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Europe PubMed Central
PMC publication ID
3160523
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
page(s)
266-271
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3160523
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
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limma
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22 June 2022
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cites work
Comprehensive comparative analysis of strand-specific RNA sequencing methods
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
RNA-Seq analysis to capture the transcriptome landscape of a single cell
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
FRT-seq: amplification-free, strand-specific transcriptome sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
Digital transcriptome profiling using selective hexamer priming for cDNA synthesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
RNA-Seq: a revolutionary tool for transcriptomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
Mapping and quantifying mammalian transcriptomes by RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
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Highly integrated single-base resolution maps of the epigenome in Arabidopsis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
The disparate nature of "intergenic" polyadenylation sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
The UCSC Table Browser data retrieval tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
The human genome browser at UCSC
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
TLS-ERG leukemia fusion protein inhibits RNA splicing mediated by serine-arginine proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
Male sterility and enhanced radiation sensitivity in TLS(-/-) mice
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
Oncoprotein TLS interacts with serine-arginine proteins involved in RNA splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
Combinatorial generation of variable fusion proteins in the Ewing family of tumours.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
28 July 2018
The landscape of C. elegans 3'UTRs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
29 October 2018
BEDTools: a flexible suite of utilities for comparing genomic features
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
29 October 2018
Transcriptome analysis by strand-specific sequencing of complementary DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
29 October 2018
Mutations in the FUS/TLS gene on chromosome 16 cause familial amyotrophic lateral sclerosis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
29 October 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
29 October 2018
lumi: a pipeline for processing Illumina microarray
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
29 October 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
29 October 2018
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160523
retrieved
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1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.04.003
retrieved
7 January 2021
Identifiers
DOI
10.1016/J.YGENO.2011.04.003
1 reference
stated in
Europe PubMed Central
PMC publication ID
3160523
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
PMC publication ID
3160523
1 reference
stated in
Europe PubMed Central
PMC publication ID
3160523
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
PubMed publication ID
21515359
1 reference
stated in
Europe PubMed Central
PMC publication ID
3160523
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21515359%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
ResearchGate publication ID
51072395
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