(Q33881284)

29 July 2017

Fast and consistent estimation of species trees using supermatrix rooted triples (English)

1 reference

29 July 2017

Michael DeGiorgio

1

1 reference

PubMed ID

19833741

29 July 2017

James H Degnan

series ordinal

2

1 reference

29 July 2017

15 October 2009

1 reference

Molecular Biology and Evolution

29 July 2017

1 reference

29 July 2017

27

1 reference

29 July 2017

3

1 reference

29 July 2017

552-569

1 reference

Properties of consensus methods for inferring species trees from gene trees

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Gene tree discordance, phylogenetic inference and the multispecies coalescent

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Robustness of topological supertree methods for reconciling dense incompatible data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Is a new and general theory of molecular systematics emerging?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Subdivision in an ancestral species creates asymmetry in gene trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Using supernetworks to distinguish hybridization from lineage-sorting

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Rooted triple consensus and anomalous gene trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Confounding factors in HGT detection: statistical error, coalescent effects, and multiple solutions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

High-resolution species trees without concatenation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Inconsistency of phylogenetic estimates from concatenated data under coalescence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

The supermatrix approach to systematics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Resolution of phylogenetic conflict in large data sets by increased taxon sampling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Discordance of species trees with their most likely gene trees.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

The evolution of supertrees.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Speciational history of Australian grass finches (Poephila) inferred from thirty gene trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Hidden likelihood support in genomic data: can forty-five wrongs make a right?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Genome-scale approaches to resolving incongruence in molecular phylogenies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Increased taxon sampling greatly reduces phylogenetic error

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Incomplete taxon sampling is not a problem for phylogenetic inference

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Relationships between gene trees and species trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

Bayesian estimation of concordance among gene trees.

5 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Combining Trees as a Way of Combining Data Sets for Phylogenetic Inference, and the Desirability of Combining Gene Trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada Dugdale).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Maximum likelihood Jukes-Cantor triplets: analytic solutions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Maximum likelihood of evolutionary trees: hardness and approximation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

BEST: Bayesian estimation of species trees under the coalescent model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: a model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Phylogenetic MCMC algorithms are misleading on mixtures of trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Modified Mincut Supertrees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Phylogenetic inference based on matrix representation of trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

A short proof that phylogenetic tree reconstruction by maximum likelihood is hard

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Discordance of species trees with their most likely gene trees: the case of five taxa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

A supertree method for rooted trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Maximum likelihood supertrees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Complexity of the simplest phylogenetic estimation problem.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Gene tree distributions under the coalescent process

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877557

29 October 2018

Taxon sampling revisited

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP250

Counting coalescent histories

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19833741

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Phylogenetic analysis in the anomaly zone

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19833741

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Rings of single-walled carbon nanotubes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19833741

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/MOLBEV/MSP250

1 reference

29 July 2017

1 reference

29 July 2017

1 reference

PubMed ID

19833741