(Q33918252)

30 July 2017

title

Variation in the analysis of positively selected sites using nonsynonymous/synonymous rate ratios: an example using influenza virus (English)

1 reference

30 July 2017

Jiming Chen

1

1 reference

30 July 2017

Yingxue Sun

series ordinal

2

1 reference

30 July 2017

language of work or name

English

0 references

publication date

24 May 2011

1 reference

30 July 2017

1 reference

30 July 2017

volume

6

1 reference

30 July 2017

issue

5

1 reference

30 July 2017

page(s)

e19996

1 reference

Creative Commons Attribution 4.0 International

30 July 2017

copyright license

start time

24 May 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Nonlinear dynamics of nonsynonymous (dN) and synonymous (dS) substitution rates affects inference of selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Detecting positive and purifying selection at synonymous sites in yeast and worm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Evolutionary trends of A(H1N1) influenza virus hemagglutinin since 1918

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Comparative genomics and the study of evolution by natural selection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

The population genetics of dN/dS

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Changing selective pressure during antigenic changes in human influenza H3.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences

5 July 2018

1 reference

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PAML 4: phylogenetic analysis by maximum likelihood

5 July 2018

1 reference

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Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Natural selection on the influenza virus genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Molecular evolution of the primate developmental genes MSX1 and PAX9.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Comparisons of dN/dS are time dependent for closely related bacterial genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Not so different after all: a comparison of methods for detecting amino acid sites under selection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Bayes empirical bayes inference of amino acid sites under positive selection

5 July 2018

1 reference

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5 July 2018

1 reference

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Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Codon-substitution models for heterogeneous selection pressure at amino acid sites

5 July 2018

1 reference

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Positive selection on the H3 hemagglutinin gene of human influenza virus A.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Parallel evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Long term trends in the evolution of H(3) HA1 human influenza type A

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101217

Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A.

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019996

Molecular evolution and positive Darwinian selection of the chloroplast maturase matK.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019996

Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019996

Positive selection in AvrP4 avirulence gene homologues across the genus Melampsora

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21629696

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A method for detecting positive selection at single amino acid sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21629696

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Statistical properties of the branch-site test of positive selection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21629696

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0019996

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference