(Q33944907)

30 July 2017

title

On the alleged origin of geminiviruses from extrachromosomal DNAs of phytoplasmas (English)

1 reference

30 July 2017

Federica Saccardo

1

1 reference

30 July 2017

Emanuele Cettul

2

1 reference

30 July 2017

Sabrina Palmano

3

1 reference

30 July 2017

Emanuela Noris

4

1 reference

30 July 2017

Giuseppe Firrao

5

1 reference

30 July 2017

publication date

28 June 2011

1 reference

30 July 2017

published in

BMC Evolutionary Biology

1 reference

30 July 2017

volume

11

1 reference

30 July 2017

page(s)

185

1 reference

phangorn: phylogenetic analysis in R

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Biological sequence simulation for testing complex evolutionary hypotheses: indel-Seq-Gen version 2.0.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Diverse circovirus-like genome architectures revealed by environmental metagenomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Evolution of geminiviruses and their satellites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Geminiviruses: a tale of a plasmid becoming a virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

In the non-insect-transmissible line of onion yellows phytoplasma (OY-NIM), the plasmid-encoded transmembrane protein ORF3 lacks the major promoter region.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Virion stability is important for the circulative transmission of tomato yellow leaf curl sardinia virus by Bemisia tabaci, but virion access to salivary glands does not guarantee transmissibility

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Discovery of a novel single-stranded DNA virus from a sea turtle fibropapilloma by using viral metagenomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Amplification of uncultured single-stranded DNA viruses from rice paddy soil

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Molecular characterization of begomoviruses and DNA satellites from Vietnam: additional evidence that the New World geminiviruses were present in the Old World prior to continental separation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Phytoplasmas: genetics, diagnosis and relationships with the plant and insect host.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Extrachromosomal DNA isolated from tomato big bud and Candidatus Phytoplasma australiense phytoplasma strains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Comparative analysis of the plasmids from two isolates of "Candidatus Phytoplasma australiense".

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Exploiting chinks in the plant's armor: evolution and emergence of geminiviruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Geminate structures of African cassava mosaic virus.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Sequence analysis of two plasmids from the phytoplasma beet leafhopper-transmitted virescence agent

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

3D-Jury: a simple approach to improve protein structure predictions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Evidence of intermolecular recombination between extrachromosomal DNAs in phytoplasma: a trigger for the biological diversity of phytoplasma?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Rolling-circle transposons in eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

A plasmid of phytoplasma encodes a unique replication protein having both plasmid- and virus-like domains: clue to viral ancestry or result of virus/plasmid recombination?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Structure of the Maize streak virus geminate particle

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

EMBOSS: the European Molecular Biology Open Software Suite

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Amino acids in the capsid protein of tomato yellow leaf curl virus that are crucial for systemic infection, particle formation, and insect transmission

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

A plasmid isolated from phytopathogenic onion yellows phytoplasma and its heterogeneity in the pathogenic phytoplasma mutant

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Homology of mycoplasma plasmid pADB201 and staphylococcal plasmid pE194

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Negative regulation of Bacillus subtilis sporulation by the spo0E gene product

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA replication initiator proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154185

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-185

In planta expression of a protein encoded by the extrachromosomal DNA of a phytoplasma and related to geminivirus replication proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-185

Geminivirus coat protein gene replacement alters insect specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-185

Agrobacterium tumefaciens supports DNA replication of diverse geminivirus types.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-185

Phytoplasma: ecology and genomic diversity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-185

Process of reductive evolution during 10 years in plasmids of a non-insect-transmissible phytoplasma

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-185

Characterization of a cryptic plasmid from an alpha-proteobacterial endosymbiont of Amoeba proteus

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-185

A Likelihood-Ratio Test of Monophyly

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-185

Two families of rep-like genes that probably originated by interspecies recombination are represented in viral, plasmid, bacterial, and parasitic protozoan genomes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21711564

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

High-affinity Rep-binding is not required for the replication of a geminivirus DNA and its satellite

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21711564

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-11-185

1 reference

Dimensions Publication ID

30 July 2017

0 references

1 reference

30 July 2017

1 reference