(Q33949582)

English

Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae

scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

30 July 2017

Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae (English)

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Alphaproteobacteria

0 references

1 reference

based on heuristic

inferred from title

metabolic network

1 reference

based on heuristic

inferred from title

Angélique Gobet

7

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

10

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

author name string

Simon M Dittami

1

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Tristan Barbeyron

2

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Catherine Boyen

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Jeanne Cambefort

4

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3 June 2020

Guillaume Collet

5

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Ludovic Delage

6

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Agnès Groisillier

8

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Catherine Leblanc

9

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3 June 2020

Delphine Scornet

11

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3 June 2020

Javier E Tapia

13

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3 June 2020

Thierry Tonon

14

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Europe PubMed Central

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3 June 2020

Anne Siegel

12

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

language of work or name

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publication date

25 July 2014

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Europe PubMed Central

PubMed publication ID

30 July 2017

Frontiers in Genetics

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

5

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

241

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

The carbohydrate-active enzymes database (CAZy) in 2013

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Thermotoga lettingae can salvage cobinamide to synthesize vitamin B12.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

The plant microbiome

1 reference

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5 July 2018

Hyphomicrobium nitrativorans sp. nov., isolated from the biofilm of a methanol-fed denitrification system treating seawater at the Montreal Biodome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Crossing paths: cytokinin signalling and crosstalk

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Coordination of auxin and ethylene biosynthesis by the aminotransferase VAS1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Marine macroalgae: an untapped resource for producing fuels and chemicals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Role of trehalose in heat and desiccation tolerance in the soil bacterium Rhizobium etli

1 reference

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5 July 2018

The second skin: ecological role of epibiotic biofilms on marine organisms

1 reference

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5 July 2018

What we can learn from sushi: a review on seaweed-bacterial associations

1 reference

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5 July 2018

Complete genome sequence of Parvibaculum lavamentivorans type strain (DS-1(T)).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Complete genome sequence of Pelagibacterium halotolerans B2(T)

1 reference

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5 July 2018

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Estimating the timing of early eukaryotic diversification with multigene molecular clocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Paracatenula, an ancient symbiosis between thiotrophic Alphaproteobacteria and catenulid flatworms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Genome sequences of eight morphologically diverse Alphaproteobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Evolution and diversity of plant cell walls: from algae to flowering plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Evolution of cytokinin biosynthesis and degradation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Central and storage carbon metabolism of the brown alga Ectocarpus siliculosus: insights into the origin and evolution of storage carbohydrates in Eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

A sequence-tagged genetic map for the brown alga Ectocarpus siliculosus provides large-scale assembly of the genome sequence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): Investigating the evolutionary nature of the "brown algal crown radiation".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Parvibaculum indicum sp. nov., isolated from deep-sea water

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Megx.net: integrated database resource for marine ecological genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Biochemical analyses of indole-3-acetaldoxime-dependent auxin biosynthesis in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

The RAST Server: rapid annotations using subsystems technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Development and physiology of the brown alga Ectocarpus siliculosus: two centuries of research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

The discovery of kelp forests in deep-water habitats of tropical regions

1 reference

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5 July 2018

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Genomes of the symbiotic nitrogen-fixing bacteria of legumes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Na(+)-Translocating NADH:quinone oxidoreductase: progress achieved and prospects of investigations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Auxin: regulation, action, and interaction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Circular genome visualization and exploration using CGView

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Computational inference of scenarios for alpha-proteobacterial genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Cultivating the uncultured

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

Physiological roles of trehalose in bacteria and yeasts: a comparative analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4110880

5 July 2018

TWO-DIMENSIONAL GEL ELECTROPHORESIS ANALYSIS OF BROWN ALGAL PROTEIN EXTRACTS(1).

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

Towards deciphering dynamic changes and evolutionary mechanisms involved in the adaptation to low salinities in Ectocarpus (brown algae).

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

Diurnal oscillations of metabolite abundances and gene analysis provide new insights into central metabolic processes of the brown alga Ectocarpus siliculosus

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

Insights into the evolution of vitamin B12 auxotrophy from sequenced algal genomes.

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

Auxin metabolism and function in the multicellular brown alga Ectocarpus siliculosus

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

ETOILE regulates developmental patterning in the filamentous brown alga Ectocarpus siliculosus.

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

The cell wall polysaccharide metabolism of the brown alga Ectocarpus siliculosus. Insights into the evolution of extracellular matrix polysaccharides in Eukaryotes.

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

Arabidopsis cytochrome P450 monooxygenase 71A13 catalyzes the conversion of indole-3-acetaldoxime in camalexin synthesis

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

Global ocean sampling collection

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https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

Rhodococcus fascians impacts plant development through the dynamic fas-mediated production of a cytokinin mix.

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

PROPOSAL OFECTOCARPUS SILICULOSUS(ECTOCARPALES, PHAEOPHYCEAE) AS A MODEL ORGANISM FOR BROWN ALGAL GENETICS AND GENOMICS

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

The Bradyrhizobium japonicum fixGHIS genes are required for the formation of the high-affinity cbb3-type cytochrome oxidase

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

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1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom.

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

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1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

The genusLaminaria sensu lato: recent insights and developments

1 reference

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21 January 2018

BOTANICAL BRIEFING: The Function and Metabolism of Ascorbic Acid in Plants

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

Ectocarpus fasciculatus: Marine Brown Alga requiring Kinetin

1 reference

https://api.crossref.org/works/10.3389%2FFGENE.2014.00241

21 January 2018

Integrative analysis of metabolite and transcript abundance during the short-term response to saline and oxidative stress in the brown alga Ectocarpus siliculosus

1 reference

https://pubmed.ncbi.nlm.nih.gov/25120558

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Married to our gut microbiota

1 reference

https://pubmed.ncbi.nlm.nih.gov/25120558

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A metabolic approach to study algal-bacterial interactions in changing environments

1 reference

https://pubmed.ncbi.nlm.nih.gov/25120558

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.3389/FGENE.2014.00241

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25120558%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

ResearchGate publication ID

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