(Q33958814)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

title

Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

0 references

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

author name string

Xiaobin Zheng

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

Zhen-Su She

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

Huaiqiu Zhu

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

language of work or name

English

0 references

publication date

12 July 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

volume

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

page(s)

361

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-361

7 February 2020

exact match

0 references

cites work

Dynamic evolution of translation initiation mechanisms in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Begin at the beginning: evolution of translational initiation

5 July 2018

1 reference

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An unexpected type of ribosomes induced by kasugamycin: a look into ancestral times of protein synthesis?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences

5 July 2018

1 reference

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uShuffle: a useful tool for shuffling biological sequences while preserving the k-let counts

5 July 2018

1 reference

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Computational evaluation of TIS annotation for prokaryotic genomes.

5 July 2018

1 reference

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Experimental characterization of Cis-acting elements important for translation and transcription in halophilic archaea

5 July 2018

1 reference

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ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes

5 July 2018

1 reference

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5 July 2018

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Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum

5 July 2018

1 reference

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MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes

5 July 2018

1 reference

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Identifying bacterial genes and endosymbiont DNA with Glimmer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Anatomy of Escherichia coli sigma70 promoters.

5 July 2018

1 reference

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Operon prediction using both genome-specific and general genomic information

5 July 2018

1 reference

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NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

5 July 2018

1 reference

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DevA, a GntR-like transcriptional regulator required for development in Streptomyces coelicolor.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

A leaderless mRNA can bind to mammalian 80S ribosomes and direct polypeptide synthesis in the absence of translation initiation factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Regulation of translation via mRNA structure in prokaryotes and eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Evolution of translational initiation: new insights from the archaea

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

A novel method for accurate operon predictions in all sequenced prokaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Accuracy improvement for identifying translation initiation sites in microbial genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

WebLogo: A Sequence Logo Generator

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

The genome sequence of the extreme thermophile Thermus thermophilus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

The COG database: an updated version includes eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

The sigma70 family of sigma factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

In vivo analysis of HPr reveals a fructose-specific phosphotransferase system that confers high-affinity uptake in Streptomyces coelicolor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Leaderless mRNAs in bacteria: surprises in ribosomal recruitment and translational control

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Autophosphorylation of a bacterial serine/threonine kinase, AfsK, is inhibited by KbpA, an AfsK-binding protein.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Beta-ketoacyl acyl carrier protein synthase III (FabH) is essential for fatty acid biosynthesis in Streptomyces coelicolor A3(2).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Genetic and transcriptional analysis of absA, an antibiotic gene cluster-linked two-component system that regulates multiple antibiotics in Streptomyces coelicolor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Selective stimulation of translation of leaderless mRNA by initiation factor 2: evolutionary implications for translation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Regulation of the furA and catC operon, encoding a ferric uptake regulator homologue and catalase-peroxidase, respectively, in Streptomyces coelicolor A3(2).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Substrate induction and glucose repression of maltose utilization by Streptomyces coelicolor A3(2) is controlled by malR, a member of the lacl-galR family of regulatory genes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Resistance of lambda cI translation to antibiotics that inhibit translation initiation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Repair of Irradiated Transforming Deoxyribonucleic Acid in Wild Type and a Radiation-Sensitive Mutant of Micrococcus radiodurans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Autoregulation and function of a repressor in bacteriophage lambda.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160421

Evidence for the translation initiation of leaderless mRNAs by the intact 70 S ribosome without its dissociation into subunits in eubacteria.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-361

Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-361

Analysis of SD sequences in completed microbial genomes: non-SD-led genes are as common as SD-led genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-361

A developmentally regulated gene encoding a repressor-like protein is essential for sporulation in Streptomyces coelicolor A3(2).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-361

Cascade of sigma factors in streptomycetes: identification of a new extracytoplasmic function sigma factor sigmaJ that is under the control of the stress-response sigma factor sigmaH in Streptomyces coelicolor A3(2).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-361

A novel mechanism for translation initiation operates in haloarchaea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-361

Prediction of translation initiation site for microbial genomes with TriTISA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-361

Binding of PhoP to promoters of phosphate-regulated genes in Streptomyces coelicolor: identification of PHO boxes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-361

Characterization of an inducible vancomycin resistance system in Streptomyces coelicolor reveals a novel gene (vanK) required for drug resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-361

Sequence Features Surrounding the Translation Initiation Sites Assigned on the Genome Sequence of Synechocystis sp. Strain PCC6803 by Amino-terminal Protein Sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-361

Translation of vph mRNA in Streptomyces lividans and Escherichia coli after removal of the 5' untranslated leader

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21749696

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Divergent transcriptional and translational signals in Archaea

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21749696

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilum

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21749696

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-361

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

7 February 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-361

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21749696%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

1 reference