(Q33958860)

30 July 2017

title

On the deletion of inverted repeated DNA in Escherichia coli: effects of length, thermal stability, and cruciform formation in vivo (English)

1 reference

chromosomal deletion syndrome

30 July 2017

main subject

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1783300

22 November 2022

repetitive DNA

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1783300

22 November 2022

1 reference

10.1093/GENETICS/129.4.991

https://api.crossref.org/works/10.1093/GENETICS/129.4.991

22 November 2022

1 reference

R. R. Sinden

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1783300

22 November 2022

G. X. Zheng

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1783300

22 November 2022

R. G. Brankamp

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1783300

22 November 2022

K. N. Allen

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1783300

22 November 2022

language of work or name

English

0 references

publication date

1 December 1991

1 reference

full work available at URL

30 July 2017

http://intl.genetics.org/cgi/content/abstract/129/4/991

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1783300

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/1783300/?tool=EBI

22 November 2022

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1783300

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/1783300/pdf/?tool=EBI

22 November 2022

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1783300

https://europepmc.org/articles/PMC1204783

22 November 2022

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1783300

https://europepmc.org/articles/PMC1204783?pdf=render

22 November 2022

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1783300

http://academic.oup.com/genetics/article-pdf/129/4/991/35349757/genetics0991.pdf

22 November 2022

file format

Portable Document Format

1 reference

10.1093/GENETICS/129.4.991

Crossref

DOI

https://api.crossref.org/works/10.1093/GENETICS/129.4.991

22 November 2022

1 reference

30 July 2017

volume

129

1 reference

30 July 2017

issue

4

1 reference

30 July 2017

page(s)

991-1005

1 reference

Variants of a cloned synthetic lactose operator. I. A palindromic dimer lactose operator derived from one stand of the cloned 40-base pair operator

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Regulation of bacterial DNA supercoiling: plasmid linking numbers vary with growth temperature

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Perfect palindromic lac operator DNA sequence exists as a stable cruciform structure in supercoiled DNA in vitro but not in vivo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

A perfectly symmetric lac operator binds the lac repressor very tightly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Variants of a cloned synthetic lactose operator II. Chloramphenicol-resistant revertants retaining a lactose operator in the CAT gene of plasmid pBR325

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

A rapid boiling method for the preparation of bacterial plasmids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Mutations in the gene coding for Escherichia coli DNA topoisomerase I affect transcription and transposition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Frameshift mutations and the genetic code. This paper is dedicated to Professor Theodosius Dobzhansky on the occasion of his 66th birthday

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Deletion formation in bacteriophage T4.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

DNA polymerase III holoenzyme of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Supercoiling in prokaryotic and eukaryotic DNA: changes in response to topological perturbation of plasmids in E. coli and SV40 in vitro, in nuclei and in CV-1 cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Gene 3 endonuclease of bacteriophage T7 resolves conformationally branched structures in double-stranded DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Local DNA sequence control of deletion formation in Escherichia coli plasmid pBR322.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Cloning, sequencing, and functional analysis of oriL, a herpes simplex virus type 1 origin of DNA synthesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Comparison of physical and genetic properties of palindromic DNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Long range structural communication between sequences in supercoiled DNA. Sequence dependence of contextual influence on cruciform extrusion mechanism.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Effects of palindrome size and sequence on genetic stability in the bacteriophage phi X174 genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Overlapping direct repeats stimulate deletions in specially designed derivatives of plasmid pBR325 in Escherichia coli.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Palindromy and the location of deletion endpoints in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

An E. coli promoter that regulates transcription by DNA superhelix-induced cruciform extrusion

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Action of RecBCD enzyme on cruciform DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

The dynamic distribution and quantification of DNA cruciforms in eukaryotic nuclei

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Effect of in vitro transcription on cruciform stability

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Frameshift mutation: determinants of specificity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Torsionally tuned cruciform and Z-DNA probes for measuring unrestrained supercoiling at specific sites in DNA of living cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Limits to the role of palindromy in deletion formation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Cloning of chemically synthesized lactose operators II. EcoRI-linkered operators

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Cruciform transitions in DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Escherichia coli DNA topoisomerase I mutants have compensatory mutations in DNA gyrase genes.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Cloning and characterization of the natural lactose operator

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

Influence of cation size and charge on the extrusion of a salt-dependent cruciform

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1204783

In vivo consequences of plasmid topology

29 October 2018

1 reference

12 December 2020

Escherichia coli DNA topoisomerase I mutants: Increased supercoiling is corrected by mutations near gyrase genes

1 reference

12 December 2020

Viability of palindromic DNA is restored by deletions occurring at low but variable frequency in plasmids of Escherichia coli

1 reference

12 December 2020

Unique self-complementarity of palindromic sequences provides DNA structural intermediates for mutation

1 reference

12 December 2020

Cruciform formation in a negatively supercoiled DNA may be kinetically forbidden under physiological conditions

1 reference

12 December 2020

Effects of salts, temperature, and stem length on supercoil-induced formation of cruciforms

1 reference

12 December 2020

Cruciform structures in supercoiled DNA

1 reference

12 December 2020

Influence of DNA sequence and supercoiling on the process of cruciform formation

1 reference

12 December 2020

DNA ring closure mediated by protein HU

1 reference

12 December 2020

Analysis of trimethylpsoralen photoreactivity to Z-DNA provides a general in vivo assay for Z-DNA: analysis of the hypersensitivity of (GT)n B-Z junctions

1 reference

12 December 2020

Effect of base composition at the center of inverted repeated DNA sequences on cruciform transitions in DNA

1 reference

12 December 2020

The role of palindromic and non-palindromic sequences in arresting DNA synthesis in vitro and in Vivo

1 reference

12 December 2020

Reduced 4,5',8-trimethylpsoralen cross-linking of left-handed Z-DNA stabilized by DNA supercoiling

1 reference

12 December 2020

A dominant influence of flanking sequences on a local structural transition in DNA

1 reference

12 December 2020

Precise and nearly-precise excision of the symmetrical inverted repeats of Tn 5; common features of recA-independent deletion events in Escherichia coli

1 reference

12 December 2020

Instability of palindromic DNA in Escherichia coli

1 reference

12 December 2020

On the formation of spontaneous deletions: The importance of short sequence homologies in the generation of large deletions

1 reference

12 December 2020

T4 endonuclease VII cleaves holliday structures

1 reference

12 December 2020

10.1093/GENETICS/129.4.991

Identifiers

DOI

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=1783300

22 November 2022

1 reference

30 July 2017

1 reference