(Q34014432)

30 July 2017

title

Gene network visualization and quantitative synteny analysis of more than 300 marine T4-like phage scaffolds from the GOS metagenome (English)

1 reference

30 July 2017

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network visualization

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André M Comeau

1

1 reference

30 July 2017

Christine Arbiol

series ordinal

2

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30 July 2017

H M Krisch

series ordinal

3

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30 July 2017

publication date

15 March 2010

1 reference

Molecular Biology and Evolution

30 July 2017

published in

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30 July 2017

volume

27

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30 July 2017

issue

8

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30 July 2017

page(s)

1935-1944

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describes a project that uses

30 July 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

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Photosystem I gene cassettes are present in marine virus genomes

28 July 2018

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28 July 2018

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Exploring the prokaryotic virosphere

28 July 2018

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28 July 2018

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Marine viruses--major players in the global ecosystem

28 July 2018

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Phage-Antibiotic Synergy (PAS): beta-lactam and quinolone antibiotics stimulate virulent phage growth

28 July 2018

1 reference

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28 July 2018

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The marine viromes of four oceanic regions

28 July 2018

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5500 Phages examined in the electron microscope

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

War is peace--dispatches from the bacterial and phage killing fields

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments

28 July 2018

1 reference

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28 July 2018

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Circular genome visualization and exploration using CGView

28 July 2018

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Genome analysis of marine photosynthetic microbes and their global role

28 July 2018

1 reference

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Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Structure and morphogenesis of bacteriophage T4.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Cytoscape: a software environment for integrated models of biomolecular interaction networks

28 July 2018

1 reference

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Marine ecosystems: bacterial photosynthesis genes in a virus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

The complete sequence of marine bacteriophage VpV262 infecting vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

28 July 2018

Bacteriophage T4 Genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Evolution of DNA polymerase families: evidences for multiple gene exchange between cellular and viral proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

DNA polymerase of the T4-related bacteriophages

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Prochlorococcus, a marine photosynthetic prokaryote of global significance

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

The capsid of the T4 phage superfamily: the evolution, diversity, and structure of some of the most prevalent proteins in the biosphere.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

QuickTree: building huge Neighbour-Joining trees of protein sequences.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Genomic analysis of uncultured marine viral communities

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Occurrence of a sequence in marine cyanophages similar to that of T4 g20 and its application to PCR-based detection and quantification techniques.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908710

Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20231334

12 December 2020

inferred from PubMed ID database lookup

Molecular characterization of T4-type bacteriophages in a rice field

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20231334

12 December 2020

inferred from PubMed ID database lookup

Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20231334

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/MOLBEV/MSQ076

1 reference

30 July 2017

1 reference

30 July 2017

1 reference