(Q34025914)

English

Study of FoxA pioneer factor at silent genes reveals Rfx-repressed enhancer at Cdx2 and a potential indicator of esophageal adenocarcinoma development

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scholarly article

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Europe PubMed Central

PubMed publication ID

30 July 2017

Study of FoxA pioneer factor at silent genes reveals Rfx-repressed enhancer at Cdx2 and a potential indicator of esophageal adenocarcinoma development (English)

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

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author name string

Jason A Watts

1

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Chaolin Zhang

2

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Andres J Klein-Szanto

3

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Jay D Kormish

4

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Jian Fu

5

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Michael Q Zhang

6

1 reference

Europe PubMed Central

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30 July 2017

Kenneth S Zaret

7

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Europe PubMed Central

PubMed publication ID

30 July 2017

publication date

15 September 2011

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Europe PubMed Central

PubMed publication ID

30 July 2017

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

7

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Europe PubMed Central

PubMed publication ID

30 July 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

e1002277

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Europe PubMed Central

PubMed publication ID

30 July 2017

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Creative Commons Attribution 4.0 International

15 September 2011

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April 2022 Public Data File from Crossref

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Ectopic Cdx2 expression in murine esophagus models an intermediate stage in the emergence of Barrett's esophagus

1 reference

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5 July 2018

Phenotypic robustness conferred by apparently redundant transcriptional enhancers

1 reference

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5 July 2018

The role of Cdx2 in Barrett's metaplasia.

1 reference

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5 July 2018

Extracting transcription factor targets from ChIP-Seq data

1 reference

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5 July 2018

Establishment of intestinal identity and epithelial-mesenchymal signaling by Cdx2.

1 reference

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Early chromatin unfolding by RUNX1: a molecular explanation for differential requirements during specification versus maintenance of the hematopoietic gene expression program

1 reference

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Induction of intestinalization in human esophageal keratinocytes is a multistep process

1 reference

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5 July 2018

Shadow enhancers as a source of evolutionary novelty

1 reference

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5 July 2018

Hepatocyte-specific ablation of Foxa2 alters bile acid homeostasis and results in endoplasmic reticulum stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Multiple regulatory regions control the complex expression pattern of the mouse Cdx2 homeobox gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

FoxA1 as a lineage-specific oncogene in luminal type breast cancer

1 reference

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Metaplasia and transdifferentiation: from pure biology to the clinic

1 reference

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A cell-type-specific transcriptional network required for estrogen regulation of cyclin D1 and cell cycle progression in breast cancer

1 reference

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5 July 2018

Plasticity and expanding complexity of the hepatic transcription factor network during liver development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Model-based analysis of tiling-arrays for ChIP-chip.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Foxa1 and Foxa2 interact with the androgen receptor to regulate prostate and epididymal genes differentially.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Autorepression of rfx1 gene expression: functional conservation from yeast to humans in response to DNA replication arrest.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

The making of the liver: developmental competence in foregut endoderm and induction of the hepatogenic program

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Bile acids directly augment caudal related homeobox gene Cdx2 expression in oesophageal keratinocytes in Barrett's epithelium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Conversion of columnar to stratified squamous epithelium in the developing mouse oesophagus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

The initiation of liver development is dependent on Foxa transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Pax3 functions at a nodal point in melanocyte stem cell differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

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Frequency of K-ras mutations in pancreatic intraductal neoplasias associated with pancreatic ductal adenocarcinoma and chronic pancreatitis: a meta-analysis

1 reference

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Identification of pregnane X receptor binding sites in the regulatory regions of genes involved in bile acid homeostasis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

The homeodomain protein CDX2 is an early marker of Barrett's oesophagus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

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Identification of an epigenetically silenced gene, RFX1, in human glioma cells using restriction landmark genomic scanning

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Pbx marks genes for activation by MyoD indicating a role for a homeodomain protein in establishing myogenic potential

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Cdx2 as a Marker of Epithelial Intestinal Differentiation in the Esophagus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Telomerase induces immortalization of human esophageal keratinocytes without p16INK4a inactivation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Syndecan-1 expression is regulated in an isoform-specific manner by the farnesoid-X receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

The hepatocyte nuclear factor 3 alpha gene, HNF3alpha (FOXA1), on chromosome band 14q13 is amplified and overexpressed in esophageal and lung adenocarcinomas.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

5 July 2018

Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3174211

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A predictive model for regulatory sequences directing liver-specific transcription.

1 reference

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5 July 2018

Cdx1 and cdx2 expression during intestinal development

1 reference

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Identification of the DNA binding specificity and potential target genes for the farnesoid X-activated receptor

1 reference

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1 reference

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1 reference

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Endogenous bile acids are ligands for the nuclear receptor FXR/BAR

1 reference

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Developmental competence of the gut endoderm: genetic potentiation by GATA and HNF3/fork head proteins

1 reference

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Transcriptional activation of the cholesterol 7alpha-hydroxylase gene (CYP7A) by nuclear hormone receptors

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RFX proteins, a novel family of DNA binding proteins conserved in the eukaryotic kingdom

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1 reference

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1 reference

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1 reference

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5 July 2018

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The HNF-3 gene family of transcription factors in mice: gene structure, cDNA sequence, and mRNA distribution

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1 reference

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1 reference

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1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002277

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Prospective multivariate analysis of clinical, endoscopic, and histological factors predictive of the development of Barrett's multifocal high-grade dysplasia or adenocarcinoma.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002277

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002277

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cdx4/lacZ and cdx2/lacZ protein gradients formed by decay during gastrulation in the mouse

1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21935353

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inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21935353

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Orphan receptors chicken ovalbumin upstream promoter transcription factor II (COUP-TFII) and retinoid X receptor (RXR) activate and bind the rat cholesterol 7alpha-hydroxylase gene (CYP7A)

1 reference

https://pubmed.ncbi.nlm.nih.gov/21935353

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21935353

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1 reference

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The role of overdiagnosis and reclassification in the marked increase of esophageal adenocarcinoma incidence

1 reference

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inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PGEN.1002277

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

ResearchGate publication ID

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