(Q34037243)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

title

Toward predicting protein topology: an approach to identifying beta hairpins (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

Xavier De la Cruz

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

Adrian Shepherd

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

author name string

E Gail Hutchinson

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

language of work or name

English

0 references

publication date

12 August 2002

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

12 November 2019

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

volume

99

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

issue

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

page(s)

11157-11162

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

Prospects for ab initio protein structural genomics.

12 November 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Assigning genomic sequences to CATH

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Threading with explicit models for evolutionary conservation of structure and sequence

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Protein secondary structure prediction based on position-specific scoring matrices

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Prediction of the location and type of beta-turns in proteins using neural networks.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Factors limiting the performance of prediction-based fold recognition methods

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Evaluation and improvement of multiple sequence methods for protein secondary structure prediction.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Fold assembly of small proteins using monte carlo simulations driven by restraints derived from multiple sequence alignments.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Protein fold recognition by prediction-based threading

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Protein secondary structure prediction using local alignments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Seventy-five percent accuracy in protein secondary structure prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Identification and application of the concepts important for accurate and reliable protein secondary structure prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

PROMOTIF--a program to identify and analyze structural motifs in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Automatic classification and analysis of alpha alpha-turn motifs in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Standard structures in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Prediction of protein secondary structure at better than 70% accuracy

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Redefining the goals of protein secondary structure prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

An algorithm to generate low-resolution protein tertiary structures from knowledge of secondary structure

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

A revised set of potentials for beta-turn formation in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Comparison of super-secondary structures in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Beta-hairpin families in globular proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Four classes of beta-hairpins in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Dominant forces in protein folding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Identifying the tertiary fold of small proteins with different topologies from sequence and secondary structure using the genetic algorithm and extended criteria specific for strand regions.

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

Prediction of protein tertiary structure to low resolution: performance for a large and structurally diverse test set.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

Correlation of observed fold frequency with the occurrence of local structural motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

Prediction of super-secondary structure in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

Predicting novel protein folds by using FRAGFOLD.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

Prediction of protein supersecondary structures based on the artificial neural network method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

Determinants of strand register in antiparallel beta-sheets of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

Molecular modeling of RNA polymerase II mutations onto DNA polymerase I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

Prediction of protein secondary structure at 80% accuracy.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Successful recognition of protein folds using threading methods biased by sequence similarity and predicted secondary structure.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123226

Threading with explicit models for evolutionary conservation of structure and sequence

29 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

Estimation and use of protein backbone angle probabilities

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

Predicted secondary and supersecondary structure for the serine-threonine-specific protein phosphatase family

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

Factors affecting the ability of energy functions to discriminate correct from incorrect folds

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162376199

21 January 2018

Identifiers

DOI

10.1073/PNAS.162376199

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12177429%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

PubMed publication ID

12177429

1 reference