(Q34040481)

30 July 2017

title

Ab initio molecular dynamics study of proton transfer in a polyglycine analog of the ion channel gramicidin A. (English)

1 reference

30 July 2017

Sagnella DE

1

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30 July 2017

Laasonen K

series ordinal

2

1 reference

30 July 2017

Klein ML

series ordinal

3

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30 July 2017

language of work or name

English

0 references

publication date

1 September 1996

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30 July 2017

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30 July 2017

volume

71

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30 July 2017

issue

3

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30 July 2017

page(s)

1172-1178

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Unified Approach for Molecular Dynamics and Density-Functional Theory

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Car-Parrinello molecular dynamics with Vanderbilt ultrasoft pseudopotentials

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Density-functional exchange-energy approximation with correct asymptotic behavior

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Structure and dynamics of hydronium in the ion channel gramicidin A.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

The gramicidin a channel: A review of its permeability characteristics with special reference to the single-file aspect of transport

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Molecular dynamics simulation of cation motion in water-filled gramicidinlike pores

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

The gramicidin A transmembrane channel: a proposed pi(L,D) helix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Nobel lecture. The photosynthetic reaction centre from the purple bacterium Rhodopseudomonas viridis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Water and polypeptide conformations in the gramicidin channel. A molecular dynamics study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Energetics of ion permeation through membrane channels. Solvation of Na+ by gramicidin A.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Time-correlation analysis of simulated water motion in flexible and rigid gramicidin channels

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Proton conductance by the gramicidin water wire. Model for proton conductance in the F1F0 ATPases?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Ion transport in a model gramicidin channel. Structure and thermodynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Water is required for proton transfer from aspartate-96 to the bacteriorhodopsin Schiff base

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Amino acid substitutions and ion channel function. Model-dependent conclusions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Ion transport in the simplest single file pore

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Molecular mechanisms for proton transport in membranes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

Number of water molecules coupled to the transport of sodium, potassium and hydrogen ions via gramicidin, nonactin or valinomycin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233584

The conformation of linear gramicidin is sequence dependent. A monolayer and infrared study

5 July 2018

1 reference

12 December 2020

Influence of the nature of the aromatic side-chain on the conductance of the channel of linear gramicidin: study of a series of 9,11,13,15-Tyr(O-protected) derivatives

1 reference

12 December 2020

Tryptophan Hydrogen Bonding and Electric Dipole Moments: Functional Roles in the Gramicidin Channel and Implications for Membrane Proteins

1 reference

12 December 2020

Soft self-consistent pseudopotentials in a generalized eigenvalue formalism

1 reference

12 December 2020

10.1016/S0006-3495(96)79321-9

Identifiers

DOI

1 reference

30 July 2017

1 reference

30 July 2017

1 reference