(Q34044808)

30 July 2017

Dissection of the adenoviral VA RNAI central domain structure reveals minimum requirements for RNA-mediated inhibition of PKR. (English)

1 reference

30 July 2017

1 reference

Jo L Wilson

1

1 reference

30 July 2017

Virginia K Vachon

2

1 reference

30 July 2017

S Sunita

3

1 reference

30 July 2017

Samantha L Schwartz

4

1 reference

30 July 2017

Graeme L Conn

5

1 reference

30 July 2017

language of work or name

English

0 references

publication date

26 June 2014

1 reference

Journal of Biological Chemistry

30 July 2017

1 reference

30 July 2017

289

1 reference

30 July 2017

33

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30 July 2017

23233-23245

1 reference

describes a project that uses

30 July 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4132820/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Domain interactions in adenovirus VAI RNA mediate high-affinity PKR binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

The adenovirus VA RNA-derived miRNAs are not essential for lytic virus growth in tissue culture cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

The structure of the eukaryotic ribosome at 3.0 Å resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Magnesium-dependent interaction of PKR with adenovirus VAI.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Adenovirus VA RNA-derived miRNAs target cellular genes involved in cell growth, gene expression and DNA repair

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

The PKR-binding domain of adenovirus VA RNAI exists as a mixture of two functionally non-equivalent structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Systematic deletion of the adenovirus-associated RNAI terminal stem reveals a surprisingly active RNA inhibitor of double-stranded RNA-activated protein kinase.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

5'-triphosphate-dependent activation of PKR by RNAs with short stem-loops

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Impact of protein kinase PKR in cell biology: from antiviral to antiproliferative action

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Adenovirus virus-associated RNA is processed to functional interfering RNAs involved in virus production

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Suppression of RNA interference by adenovirus virus-associated RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Adenovirus VA1 noncoding RNA can inhibit small interfering RNA and MicroRNA biogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

General plasmids for producing RNA in vitro transcripts with homogeneous ends

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Identification of binding sites for both dsRBMs of PKR on kinase-activating and kinase-inhibiting RNA ligands

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Geometric nomenclature and classification of RNA base pairs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Use of terbium as a probe of tRNA tertiary structure and folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Synthesis and purification of single-stranded RNA for use in experiments with PKR and in cell-free translation systems.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Secondary and tertiary structure in the central domain of adenovirus type 2 VA RNA I

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Structure, function, and evolution of adenovirus-associated RNA: a phylogenetic approach.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Comparative analysis of the structure and function of adenovirus virus-associated RNAs.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Structural features of adenovirus 2 virus-associated RNA required for binding to the protein kinase DAI.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

In vitro analysis of virus-associated RNA I (VAI RNA): inhibition of the double-stranded RNA-activated protein kinase PKR by VAI RNA mutants correlates with the in vivo phenotype and the structural integrity of the central domain.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Comparative analysis of the regulation of the interferon-inducible protein kinase PKR by Epstein-Barr virus RNAs EBER-1 and EBER-2 and adenovirus VAI RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Activation of interferon-inducible 2'-5' oligoadenylate synthetase by adenoviral VAI RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Interactions between the double-stranded RNA binding motif and RNA: definition of the binding site for the interferon-induced protein kinase DAI (PKR) on adenovirus VA RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Effects of mutations in stem and loop regions on the structure and function of adenovirus VA RNAI

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Functional dissection of adenovirus VAI RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Adenovirus virus-associated RNA and translation control

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Binding of the adenovirus VAI RNA to the interferon-induced 68-kDa protein kinase correlates with function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132820

Regulation of the interferon-inducible 2'-5'-oligoadenylate synthetases by adenovirus VA(I) RNA.

5 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.550046

Selective binding by the RNA binding domain of PKR revealed by affinity cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.550046

Analysis of adenovirus VA RNAI structure and stability using compensatory base pair modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.550046

Mechanism of PKR activation: dimerization and kinase activation in the absence of double-stranded RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.550046

Transcriptional control regions of the adenovirus VAI RNA gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.550046

The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.550046

Solution conformation of adenovirus virus associated RNA-I and its interaction with PKR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.550046

Characterization of the direct physical interaction of nc886, a cellular non-coding RNA, and PKR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M114.550046

Plasmid template design and in vitro transcription of short RNAs within a "structure cassette" for structure probing experiments

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24970889

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M114.550046

1 reference

30 July 2017

1 reference

30 July 2017

1 reference