(Q34049653)

30 July 2017

Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome (English)

1 reference

30 July 2017

0 references

0 references

1 reference

Margret E Berg Miller

1

1 reference

30 July 2017

Carl J Yeoman

2

1 reference

30 July 2017

Nicholas Chia

3

1 reference

30 July 2017

Susannah G Tringe

4

1 reference

30 July 2017

Florent E Angly

5

1 reference

30 July 2017

Robert A Edwards

6

1 reference

30 July 2017

Harry J Flint

7

1 reference

30 July 2017

Raphael Lamed

8

1 reference

30 July 2017

Edward A Bayer

9

1 reference

30 July 2017

Bryan A White

10

1 reference

30 July 2017

17 October 2011

1 reference

Environmental Microbiology

30 July 2017

1 reference

30 July 2017

14

1 reference

30 July 2017

1

1 reference

30 July 2017

207-227

1 reference

Basic local alignment search tool

30 July 2017

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Horizontal gene exchange in environmental microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

The marine viromes of four oceanic regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

The RAST Server: rapid annotations using subsystems technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Complete genome sequence and analysis of Wolinella succinogenes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Here a virus, there a virus, everywhere the same virus?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Genomic analysis of uncultured marine viral communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Metagenomic analyses of an uncultured viral community from human feces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

ACT: the Artemis Comparison Tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

DNA sequence quality trimming and vector removal.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Inference and characterization of horizontally transferred gene families using stochastic mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

CRISPR/Cas system and its role in phage-bacteria interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Functional metagenomic profiling of nine biomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Mobile genetic elements: the agents of open source evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

CRISPR associated diversity within a population of Sulfolobus islandicus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Bacteriophage host range and bacterial resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

The glycobiome of the rumen bacterium Butyrivibrio proteoclasticus B316(T) highlights adaptation to a polysaccharide-rich environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Transfer of photosynthesis genes to and from Prochlorococcus viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Klebsiella to Salmonella gene transfer within rumen protozoa: implications for antibiotic resistance and rumen defaunation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Marine ecosystems: bacterial photosynthesis genes in a virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Census of the viral metagenome within an activated sludge microbial assemblage

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Viruses in the faecal microbiota of monozygotic twins and their mothers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Viral and microbial community dynamics in four aquatic environments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Explaining microbial population genomics through phage predation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

21 January 2018

Global phage diversity

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Viruses manipulate the marine environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Factors that alter rumen microbial ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Crystal structure of the polysialic acid-degrading endosialidase of bacteriophage K1F.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Transfer of antibiotic resistance marker genes between lactic acid bacteria in model rumen and plant environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

Trade-offs between competition and defense specialists among unicellular planktonic organisms: the "killing the winner" hypothesis revisited.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02593.X

10.1111/J.1462-2920.2011.02593.X

21 January 2018

Identifiers

DOI

1 reference

30 July 2017

1 reference