(Q34058062)

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A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028637%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028637%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Michael P Thelen

6

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028637%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

4

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028637%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Jillian Banfield

8

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028637%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

author name string

Alexis P Yelton

1

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15 January 2020

Brian C Thomas

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028637%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Sheri L Simmons

3

1 reference

Europe PubMed Central

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15 January 2020

Adam Zemla

5

1 reference

Europe PubMed Central

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15 January 2020

Nicholas Justice

7

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028637%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

publication date

20 October 2011

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15 January 2020

PLOS Computational Biology

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15 January 2020

7

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Europe PubMed Central

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15 January 2020

10

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15 January 2020

e1002230

1 reference

Europe PubMed Central

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15 January 2020

copyright license

Creative Commons Attribution 4.0 International

20 October 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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5 July 2018

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1 reference

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Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs

1 reference

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5 July 2018

CbiZ, an amidohydrolase enzyme required for salvaging the coenzyme B12 precursor cobinamide in archaea

1 reference

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Community structure and metabolism through reconstruction of microbial genomes from the environment

1 reference

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STRING: a database of predicted functional associations between proteins

1 reference

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The ERGO genome analysis and discovery system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197636

5 July 2018

STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene

1 reference

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5 July 2018

Predicting protein function by genomic context: quantitative evaluation and qualitative inferences

1 reference

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5 July 2018

Gene and context: integrative approaches to genome analysis

1 reference

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An archaeal iron-oxidizing extreme acidophile important in acid mine drainage

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Testing character correlation using pairwise comparisons on a phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197636

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The use of gene clusters to infer functional coupling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197636

5 July 2018

Conservation of gene order: a fingerprint of proteins that physically interact

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197636

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Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

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Evolution of prokaryotic gene order: genome rearrangements in closely related species.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002230

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Prediction of effective genome size in metagenomic samples

1 reference

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Function of MoaB proteins in the biosynthesis of the molybdenum and tungsten cofactors

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General enzymatic screens identify three new nucleotidases in Escherichia coli. Biochemical characterization of SurE, YfbR, and YjjG.

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1 reference

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1 reference

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1 reference

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Gene order is not conserved in bacterial evolution

1 reference

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12 December 2020

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10.1371/JOURNAL.PCBI.1002230

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028637%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

DBLP publication ID

journals/ploscb/YeltonTSWZTJB11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028637%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22028637%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

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