(Q34058962)

30 July 2017

title

SegMine workflows for semantic microarray data analysis in Orange4WS (English)

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30 July 2017

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1 reference

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Vid Podpečan

1

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30 July 2017

Nada Lavrač

2

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30 July 2017

Igor Mozetič

3

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30 July 2017

Petra Kralj Novak

4

1 reference

30 July 2017

Igor Trajkovski

5

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30 July 2017

Laura Langohr

6

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30 July 2017

Kimmo Kulovesi

7

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30 July 2017

Hannu Toivonen

8

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30 July 2017

Marko Petek

9

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30 July 2017

Helena Motaln

10

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30 July 2017

Kristina Gruden

11

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30 July 2017

publication date

26 October 2011

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30 July 2017

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30 July 2017

volume

12

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30 July 2017

page(s)

416

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Creative Commons Attribution 2.0 Generic

30 July 2017

copyright license

start time

26 October 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

The effect of the intra-S-phase checkpoint on origins of replication in human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

The roles of transforming growth factor-β and Smad3 signaling in adipocyte differentiation and obesity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

BioCatalogue: a universal catalogue of web services for the life sciences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

How to track cellular aging of mesenchymal stromal cells?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Modular analysis of gene expression data with R.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

GO-Bayes: Gene Ontology-based overrepresentation analysis using a Bayesian approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

FiGS: a filter-based gene selection workbench for microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Replicative senescence-associated gene expression changes in mesenchymal stromal cells are similar under different culture conditions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Network visualization and analysis of gene expression data using BioLayout Express(3D).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Web services at the European Bioinformatics Institute-2009

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

BioMart Central Portal--unified access to biological data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

A general modular framework for gene set enrichment analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Reactome knowledgebase of human biological pathways and processes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Replicative senescence of mesenchymal stem cells: a continuous and organized process

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

SEGS: search for enriched gene sets in microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Using GOstats to test gene lists for GO term association

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Taverna: a tool for building and running workflows of services

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Graph-based analysis and visualization of experimental results with ONDEX

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Ontological analysis of gene expression data: current tools, limitations, and open problems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

PAGE: parametric analysis of gene set enrichment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Entrez Gene: gene-centered information at NCBI

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Gene expression profiling in human preadipocytes and adipocytes by microarray analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Repair of telomeric DNA prior to replicative senescence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Gene ontology: tool for the unification of biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

KEGG: kyoto encyclopedia of genes and genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3216973

Microarrays: biotechnology's discovery platform for functional genomics.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-416

POWER_SAGE: comparing statistical tests for SAGE experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-416

GSEA-P: a desktop application for Gene Set Enrichment Analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-416

Extensions to gene set enrichment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-416

Gene expression profile of adult T-cell acute lymphocytic leukemia identifies distinct subsets of patients with different response to therapy and survival.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-416

Bone marrow microenvironment in fanconi anemia: a prospective functional study in a cohort of fanconi anemia patients

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22029475

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22029475

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

KNIME - the Konstanz information miner: version 2.0 and beyond

1 reference

5 April 2022

https://opencitations.net/index/coci/api/v1/citations/10.1145/1656274.1656280

Identifiers

DOI

10.1186/1471-2105-12-416

1 reference

journals/bmcbi/PodpecanLMNTLKTPMG11

30 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

30 July 2017

1 reference