(Q34061405)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

title

Genome-wide characterization of insertion and deletion variation in chicken using next generation sequencing (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

author name string

Yiyuan Yan

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Guoqiang Yi

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Congjiao Sun

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Lujiang Qu

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

language of work or name

English

0 references

publication date

18 August 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

page(s)

e104652

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

12 March 2020

copyright license

start time

18 August 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

massive parallel sequencing

1 reference

Genetic diversity of myanmar and indonesia native chickens together with two jungle fowl species by using 102 indels polymorphisms

inferred from title

cites work

1 reference

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28 July 2018

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Genome-wide patterns of genetic variation in two domestic chickens

28 July 2018

1 reference

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Strong mutational bias toward deletions in the Drosophila melanogaster genome is compensated by selection

28 July 2018

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Development of a high density 600K SNP genotyping array for chicken

28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Analysis of insertion-deletion from deep-sequencing data: software evaluation for optimal detection

28 July 2018

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NGS QC Toolkit: a toolkit for quality control of next generation sequencing data

28 July 2018

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Optimized filtering reduces the error rate in detecting genomic variants by short-read sequencing.

28 July 2018

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Genome-wide genetic marker discovery and genotyping using next-generation sequencing

28 July 2018

1 reference

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Genotype and SNP calling from next-generation sequencing data

28 July 2018

1 reference

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Natural genetic variation caused by small insertions and deletions in the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Base-calling for next-generation sequencing platforms

28 July 2018

1 reference

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A map of human genome variation from population-scale sequencing

28 July 2018

1 reference

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Dindel: accurate indel calls from short-read data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Small insertions and deletions (INDELs) in human genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Effects of the thyroid hormone responsive spot 14alpha gene on chicken growth and fat traits

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Challenges of sequencing human genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Whole-genome resequencing reveals loci under selection during chicken domestication

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Discovery and application of insertion-deletion (INDEL) polymorphisms for QTL mapping of early life-history traits in Atlantic salmon

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

The Sequence Alignment/Map format and SAMtools

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Fast and accurate short read alignment with Burrows-Wheeler transform

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Insertion-deletion polymorphisms (indels) as genetic markers in natural populations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Chromosomal mapping of chicken mega-telomere arrays to GGA9, 16, 28 and W using a cytogenomic approach

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

A mutation in the myostatin gene increases muscle mass and enhances racing performance in heterozygote dogs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Comparative genomic analysis of human and chimpanzee indicates a key role for indels in primate evolution.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

An initial map of insertion and deletion (INDEL) variation in the human genome.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

An inventory of mucin genes in the chicken genome shows that the mucin domain of Muc13 is encoded by multiple exons and that ovomucin is part of a locus of related gel-forming mucins

28 July 2018

1 reference

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An intronic insertion in KPL2 results in aberrant splicing and causes the immotile short-tail sperm defect in the pig

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

28 July 2018

1 reference

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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

28 July 2018

1 reference

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The Dominant white, Dun and Smoky color variants in chicken are associated with insertion/deletion polymorphisms in the PMEL17 gene

28 July 2018

1 reference

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Comprehensive identification and characterization of diallelic insertion-deletion polymorphisms in 330 human candidate genes

28 July 2018

1 reference

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Reduced variation on the chicken Z chromosome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

dbSNP: the NCBI database of genetic variation

28 July 2018

1 reference

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A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle

28 July 2018

1 reference

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Low frequency of microsatellites in the avian genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Dysfunctional growth hormone receptor in a strain of sex-linked dwarf chicken: evidence for a mutation in the intracellular domain

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Construction of a general human chromosome jumping library, with application to cystic fibrosis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

The supramolecular organization of ovomucin. Biophysical and morphological studies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4136736

Progress from chicken genetics to the chicken genome

28 July 2018

1 reference

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The genomic landscape of short insertion and deletion polymorphisms in the chicken (Gallus gallus) Genome: a high frequency of deletions in tandem duplicates

21 January 2018

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Patterns of insertion and deletion in Mammalian genomes.

21 January 2018

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An insertion mutation of the bovine Fii gene is responsible for factor XI deficiency in Japanese black cattle.

21 January 2018

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Whole-genome sequencing and variant discovery in C. elegans.

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

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Comparing a few SNP calling algorithms using low-coverage sequencing data

21 January 2018

1 reference

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Duplicated Spot 14 genes in the chicken: characterization and identification of polymorphisms associated with abdominal fat traits.

21 January 2018

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Association of Spot14alpha gene polymorphisms with body weight in the chicken

21 January 2018

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The development and characterization of a 60K SNP chip for chicken.

21 January 2018

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Indel arrays: an affordable alternative for genotyping

21 January 2018

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Development of InDel markers for Brassica rapa based on whole-genome re-sequencing

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25133774

12 December 2020

inferred from PubMed ID database lookup

Trinucleotide repeat expansion and human disease

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25133774

12 December 2020

inferred from PubMed ID database lookup

Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: a perspective for genetic association studies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25133774

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PONE.0104652

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

PubMed publication ID

25133774

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25133774%20AND%20SRC:MED&resulttype=core&format=json