(Q34074166)

30 July 2017

title

Validating clustering of molecular dynamics simulations using polymer models (English)

1 reference

30 July 2017

Joshua L Phillips

1

1 reference

30 July 2017

Michael E Colvin

series ordinal

2

1 reference

30 July 2017

Shawn Newsam

series ordinal

3

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30 July 2017

publication date

14 November 2011

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30 July 2017

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30 July 2017

volume

12

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30 July 2017

page(s)

445

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Creative Commons Attribution 2.0 Generic

30 July 2017

copyright license

start time

14 November 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3284309

An Analysis of the Validity of Markov State Models for Emulating the Dynamics of Classical Molecular Systems and Ensembles

28 July 2018

1 reference

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Microsecond simulations of the folding/unfolding thermodynamics of the Trp-cage miniprotein.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3284309

A bimodal distribution of two distinct categories of intrinsically disordered structures with separate functions in FG nucleoporins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3284309

Common structural transitions in explicit-solvent simulations of villin headpiece folding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3284309

Intramolecular cohesion of coils mediated by phenylalanine--glycine motifs in the natively unfolded domain of a nucleoporin

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3284309

Quantitative characterization of intrinsic disorder in polyglutamine: insights from analysis based on polymer theories

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3284309

Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3284309

Ensemble-based convergence analysis of biomolecular trajectories

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3284309

The Amber biomolecular simulation programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3284309

Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion

28 July 2018

1 reference

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MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3284309

Statistical clustering techniques for the analysis of long molecular dynamics trajectories: analysis of 2.2-ns trajectories of YPGDV.

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-445

Atomic-Level Characterization of the Structural Dynamics of Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-445

Ten-microsecond molecular dynamics simulation of a fast-folding WW domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-445

Molecular simulations of protein disorder

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-445

21 January 2018

Identifiers

DOI

10.1186/1471-2105-12-445

1 reference

journals/bmcbi/PhillipsCN11

30 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

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30 July 2017

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