(Q34082231)

30 July 2017

title

Hidden state prediction: a modification of classic ancestral state reconstruction algorithms helps unravel complex symbioses (English)

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30 July 2017

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Jesse R R Zaneveld

1

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30 July 2017

Rebecca L V Thurber

series ordinal

2

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30 July 2017

publication date

25 August 2014

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Frontiers in Microbiology

30 July 2017

published in

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30 July 2017

volume

5

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30 July 2017

page(s)

431

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Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism

30 July 2017

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5 July 2018

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5 July 2018

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Enhanced microbial diversity in the saliva microbiome induced by short-term probiotic intake revealed by 16S rRNA sequencing on the IonTorrent PGM platform

5 July 2018

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Seasonal variation in human gut microbiome composition

5 July 2018

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Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

5 July 2018

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Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships

5 July 2018

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Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus).

5 July 2018

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5 July 2018

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

5 July 2018

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Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules

5 July 2018

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Insights into the phylogeny and coding potential of microbial dark matter

5 July 2018

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Differences in gut microbiota composition between obese and lean children: a cross-sectional study

5 July 2018

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Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance

5 July 2018

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Diversity, stability and resilience of the human gut microbiota

5 July 2018

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Structure, function and diversity of the healthy human microbiome

5 July 2018

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An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

5 July 2018

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Why the phylogenetic regression appears robust to tree misspecification

5 July 2018

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A global network of coexisting microbes from environmental and whole-genome sequence data

5 July 2018

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A human gut microbial gene catalogue established by metagenomic sequencing

5 July 2018

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Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives

5 July 2018

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Phylogenetic analysis and comparative data: a test and review of evidence

5 July 2018

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Testing hypotheses of convergence with multivariate data: morphological and functional convergence among herbivorous lizards

5 July 2018

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Protein molecular function prediction by Bayesian phylogenomics

5 July 2018

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Obesity alters gut microbial ecology

5 July 2018

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Genomic insights that advance the species definition for prokaryotes

5 July 2018

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Evolution of gene order conservation in prokaryotes

5 July 2018

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RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum-likelihood methods.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4142861

Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4142861

The Phylogenetic Regression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4142861

Microbial ecology of the gastrointestinal tract

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4142861

Phylogenetic prediction of the maximum per capita rate of population growth.

5 July 2018

1 reference

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Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00431

Phylogenies and the Comparative Method: A General Approach to Incorporating Phylogenetic Information into the Analysis of Interspecific Data

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00431

Virtual metagenome reconstruction from 16S rRNA gene sequences

21 January 2018

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https://api.crossref.org/works/10.3389%2FFMICB.2014.00431

The ecological coherence of high bacterial taxonomic ranks

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00431

Composition of Archaea in seawater, sediment, and sponges in the Kepulauan Seribu reef system, Indonesia.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00431

Using the Past to Predict the Present: Confidence Intervals for Regression Equations in Phylogenetic Comparative Methods.

21 January 2018

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Phylogenetic eigenvector maps: a framework to model and predict species traits

28 October 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00431

Using phylogenetic information to predict species tolerances to toxic chemicals

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00431

21 January 2018

Identifiers

DOI

10.3389/FMICB.2014.00431

1 reference

30 July 2017

1 reference

30 July 2017

1 reference