(Q34084053)

30 July 2017

alpha-helix formation: discontinuous molecular dynamics on an intermediate-resolution protein model (English)

1 reference

30 July 2017

Voegler Smith A

1

1 reference

PubMed ID

11455608

30 July 2017

Hall CK

series ordinal

2

1 reference

PubMed ID

11455608

30 July 2017

language of work or name

English

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publication date

1 August 2001

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30 July 2017

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30 July 2017

44

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30 July 2017

344-360

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30 July 2017

3

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Deciphering the timescales and mechanisms of protein folding using minimal off-lattice models

30 July 2017

1 reference

Protein dynamics simulations from nanoseconds to microseconds

21 January 2018

1 reference

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

21 January 2018

1 reference

Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

21 January 2018

1 reference

Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin

21 January 2018

1 reference

Computer simulations of de novo designed helical proteins

21 January 2018

1 reference

Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus

21 January 2018

1 reference

A simplified amino acid potential for use in structure predictions of proteins.

21 January 2018

1 reference

Reduced representation model of protein structure prediction: statistical potential and genetic algorithms

21 January 2018

1 reference

Three-helix-bundle protein in a Ramachandran model

21 January 2018

1 reference

A molecular dynamics simulation of polyalanine: an analysis of equilibrium motions and helix-coil transitions

21 January 2018

1 reference

Unfolding of an ?-helix in water

21 January 2018

1 reference

Molecular dynamics simulations of the unfolding of an alpha-helical analogue of ribonuclease A S-peptide in water

21 January 2018

1 reference

Molecular dynamics simulations of helix denaturation

21 January 2018

1 reference

Molecular dynamics simulations of isolated helices of myoglobin

21 January 2018

1 reference

Kinetic steps for alpha-helix formation

21 January 2018

1 reference

Helix folding simulations with various initial conformations

21 January 2018

1 reference

Folding simulations of alanine-based peptides with lysine residues

21 January 2018

1 reference

Fast events in protein folding: helix melting and formation in a small peptide.

21 January 2018

1 reference

Direct observation of fast protein folding: the initial collapse of apomyoglobin

21 January 2018

1 reference

Submillisecond protein folding kinetics studied by ultrarapid mixing

21 January 2018

1 reference

Protein folding triggered by electron transfer

21 January 2018

1 reference

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

21 January 2018

1 reference

Elucidating the folding problem of helical peptides using empirical parameters.

21 January 2018

1 reference

Studies in Molecular Dynamics. I. General Method

21 January 2018

1 reference

Folding thermodynamics of a model three-helix-bundle protein.

21 January 2018

1 reference

Folding of a model three-helix bundle protein: a thermodynamic and kinetic analysis.

21 January 2018

1 reference

Discrete molecular dynamics studies of the folding of a protein-like model.

21 January 2018

1 reference

Identifying the protein folding nucleus using molecular dynamics.

21 January 2018

1 reference

Assembly of a tetrameric alpha-helical bundle: computer simulations on an intermediate-resolution protein model

21 January 2018

1 reference

A simple protein folding algorithm using a binary code and secondary structure constraints.

21 January 2018

1 reference

Hydrogen bonding in globular proteins

21 January 2018

1 reference

Molecular dynamics simulations at constant pressure and/or temperature

21 January 2018

1 reference

Multiple pathways on a protein-folding energy landscape: kinetic evidence

21 January 2018

1 reference

Observation of strange kinetics in protein folding

21 January 2018

1 reference

From Levinthal to pathways to funnels

21 January 2018

1 reference

The nature of protein folding pathways: the classical versus the new view

21 January 2018

1 reference

Funnels, pathways, and the energy landscape of protein folding: a synthesis

21 January 2018

1 reference

Prediction of the thermodynamics of protein unfolding: the helix-coil transition of poly(L-alanine).

21 January 2018

1 reference

Free energy determinants of secondary structure formation: I. alpha-Helices

21 January 2018

1 reference

Side-chain entropy opposes alpha-helix formation but rationalizes experimentally determined helix-forming propensities

21 January 2018

1 reference

Interactions between hydrophobic side chains within alpha-helices

21 January 2018

1 reference

Helix stabilization by Glu-...Lys+ salt bridges in short peptides of de novo design

21 January 2018

1 reference

Unusually stable helix formation in short alanine-based peptides

21 January 2018

1 reference

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

21 January 2018

1 reference

Parameters of helix-coil transition theory for alanine-based peptides of varying chain lengths in water

21 January 2018

1 reference

Residue helix parameters obtained from dichroic analysis of peptides of defined sequence.

21 January 2018

1 reference

Modulation of the helical stability of a model peptide by ionic residues.

21 January 2018

1 reference

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

21 January 2018

1 reference

Stability of alpha-helices

21 January 2018

1 reference

Thermodynamic parameters for the helix-coil transition of oligopeptides: molecular dynamics simulation with the peptide growth method

21 January 2018

1 reference

Interaction between water and polar groups of the helix backbone: an important determinant of helix propensities

21 January 2018

1 reference

Conversion of alpha-helices into beta-sheets features in the formation of the scrapie prion proteins

21 January 2018

1 reference

Protein aggregation: folding aggregates, inclusion bodies and amyloid

21 January 2018

1 reference

From computer simulations to human disease: emerging themes in protein folding

21 January 2018

1 reference

Amyloid diseases: abnormal protein aggregation in neurodegeneration

21 January 2018

1 reference

Cellular mechanisms of beta-amyloid production and secretion

21 January 2018

1 reference

Thermodynamics of model prions and its implications for the problem of prion protein folding

21 January 2018

1 reference

Thermodynamics of Helix-Coil Transitions Studied by Multicanonical Algorithms

21 January 2018

1 reference

Finite-size scaling of helix–coil transitions in poly-alanine studied by multicanonical simulations

21 January 2018

1 reference

Helix-forming tendencies of nonpolar amino acids predicted by Monte Carlo simulated annealing

21 January 2018

1 reference

Matching speed and stability

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/PROT.1100

1 reference

30 July 2017

1 reference

PubMed ID

11455608